Gene detail

Detail information of GWHGAAEX005175/evm.TU.scaffold_16.127

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695023338\|ref\|XP_009398833.1\|	1.31E-21	PREDICTED: HMG-Y-related protein A-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q00423\|HMGYA_SOYBN	3.00E-07	HMG-Y-related protein A
trEMBL	tr\|M0STB7\|M0STB7_MUSAM	2.00E-15	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P30050_001}

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000024	3840656	3842957	-

Transcript Sequence
>GWHTAAEX005175 CCCTGCAGAAACTTTAGACATAAATGCTAAACATCGAAAATATTTAATTCATTAAATTTGGCATAATTAAGTAGACACCAAATGAAATTAAGATCAGAAGGTATTGGGCCTAAAAAGGGCTATTGGGCTTTCAGAAGGCGCCGACTCTTAGGTTCATACAGCCCAGCGCCACGCACTTCAAAACGGAAGCAGCAGAGAGTAATTCAGATCCGAAGCCCTCTCCGTTCTCACATGCGGATGCGGCGCCCCTTTAGGGGCATCATTTATTGCTCCGGCGGAAGTTCCAGCGGCGGCACTGGCGTATTCACAAACCCTGATCGACACACCCCGGACCACCCTCCCTATTCCGAGATGGTTGACGTTGCGCTGCGAGCACTCTCCGAGGAGAACGGATCGACCGAAGCTTCGATCTCCGCCTACATCCGATCGAACTACAGTGACCTCCCATGGGGTCACGATCGCCTCCTCCCTTACTATCTCCGAAAGCTCATCGCTTCTGGCGAACTAGCGTCTCCCTCCCAAGATAGGTACCAACTCCCCTCTCAGCTTCCTTTGCTCACTTCTCCTTTCCCTCGCAGGGGCCGTCCTCGACTCCACCCCCTTAGCCCTAACCCTAGCTTTAGCCCGAACCCTTCTTCTTCACCTGTCCCTCAGGGTAGAGCACGGCTGCCCAGTCGCCATTTAAGTTGTCCCGAGCTTGTTGGCAAGGGCACGCCTCCACGTATAGGGCAAGGAACAGTGCCGCTGCTGCGAGGGAGGGGGAGGGGGAGGGGGAGAGGGAGGGGGAGGCCTCGACTTGCGGGTGATGCCATTGGAAAGACAGAGCCACGTAGTTTGATTCGGCGTTCAAGGGGTACCAAGAGGAAACGGGATAGCTCCCTGGCTAGCAATGCTGAAGATTTGAATTGCCAGGCGGGATTTTTGGCAGCATGCGATGATACTAAAATTGGAGGTTCTGAAATATGTGTCTTTGAGAATTCTGAACATGTTGATGGAGATGGGAAGTCATCTGTGGCACCCCCTGTTCAAGCTGATCATGGAACTGGACCATTTTTGAAGGAAGAGCCATTATTTTTAGTTCCAGAACCGGCTAAATTGCCTCCCTTTTTGGCTTCCGAGCATCGTGAGCATGGTGTTGAGCAACTTCTGCAGGGGGAGCCTTTACCATCTGTGGTTTCTGAGCAGATAGACTTCAGCCAGGTTCAATCATCACCAGGAGAAAAACTACCTTTGTATACTCCTGATCAAGAAAAAGTGCTTCCTTGTATAACTCCCGAGCTTTTTGAGCATGACCAGAGACATGGAGAAAAACCGCTACTGGTTCTGGAGCAATCAAAGCCTGCTGAATTCCTCAAGCCAGGACTCAATTCATCTGTTTTGACTTTTCAGAATTTTGAGCTTGATTCGGGAAAATCTCTGCTAAGAGACGTACCACCATTCGTTCCTCCCGAGCAGACTGAGTTGGTTCAGAAATTGCTTGATGGATCTCCATTTTCATCTCCCAAGCAGCCTGAGCTTGACCATGAGCTTCAATTGCAAGCTCATGAAGAGTTGGTTCAGAAATTGAGTGAAGGGCCTCCTTTGTTACCTCCCAAGCAGCCTGAGCTGGACCATAAATTGTCATTGGAAGTTCATGAAGAGTTTGAGAATGACCATGAACAAAGTTTACCTGGTGTAAGAATGCTAGATTCTAAGGAGAGGGAATTAGGGATGATGTCATGTCCTCAAACAAAAAAGGCACTAAGTGACTCAGCTGTGAGAAAGAAGAAAAAGGAACGGGAAAGGCGCAGAAGTAAAAGGCTCTGGTTTGAAGCTTAAACTGGCAATTTATTTTGATGAAATGTCCTTCAAGGTCTTGTTTCCTCCCAAGTTTAGTTTTATTGATCTTATCTAAAGTGAGGTCTGTAAAGAAATTTTCCTAATCTTGAGCGTGAACCGGAAGATATGTTTGAATTTGGGAGTTCTTTTATCTGTGAAAAATATTAAAACCCTGAAGTTTTGAATGGTAATTTCAATTGTAGCGGCACACCTTGTTCATCTTTGTTATTTTCATTTGGAAATTAGGTGTTGAAGAACCTTAACGAGTAAATTAGTCAGTTATTATTACTTTATTATTCTCAGATTGATGCAGCAGTTTTAAGAACTTTTTTTTCACAAATCTTAAAAAGATTTACTCATATTTTAGAAAAGGCTTTTAGTCTACATA

Network for GWHGAAEX005175

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00538.18	Linker_histone	85	146	3.50E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006334	Biological Process	nucleosome assembly
GO:0003677	Molecular Function	DNA binding
GO:0005634	Cellular Component	nucleus
GO:0000786	Cellular Component	nucleosome

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	39.760
SRP064423	SRR2545915	Juvenile tuber	41.500
SRP108465	SRR5643513	five period of Gastrodia elata	27.250
	SRR5643514	five period of Gastrodia elata	25.720
	SRR5643515	five period of Gastrodia elata	24.460
	SRR5643524	five period of Gastrodia elata	24.400
	SRR5643525	five period of Gastrodia elata	28.860
	SRR5643528	five period of Gastrodia elata	20.070
	SRR5643658	five period of Gastrodia elata	25.180
	SRR5643659	five period of Gastrodia elata	32.850
	SRR5643660	five period of Gastrodia elata	40.330
	SRR5643661	five period of Gastrodia elata	34.700
	SRR5643662	five period of Gastrodia elata	38.540
	SRR5643663	five period of Gastrodia elata	40.270
	SRR5643664	five period of Gastrodia elata	35.860
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	36.030
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	48.950
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	33.190
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	40.240
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	38.400
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	42.420
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	34.210
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	38.030
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	32.080
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	29.810
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.360
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.360
SRP279888	Gastro	Gastrodia elata tuber	40.86
	Juven	Juvenile tuber	60.91
	Mother_Gastro	Mother tuber of Gastrodia elata	25.80
	Mother_Juven	Mother tuber of Juvenile	50.40