Gene detail

Detail information of GWHGAAEX005177/evm.TU.scaffold_16.129

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672140909\|ref\|XP_008794270.1\|	2.86E-140	PREDICTED: AT-rich interactive domain-containing protein 2-like [Phoenix dactylifera]
Swissprot	tr\|Q9LDD4\|ARID2_ARATH	6.00E-73	AT-rich interactive domain-containing protein 2
trEMBL	tr\|M0SXE0\|M0SXE0_MUSAM	4.00E-99	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P10610_001}
TAIR	AT4G11400	2.00E-72	ARID/BRIGHT DNA-binding domain;ELM2 domain protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000024	3886496	3898902	-

Transcript Sequence
>GWHTAAEX005177 CCTTCACCATATTATTATGTAAAGTATACCATTTTAGAAGAGAGGATAGGGTTTTTTTTTGTGTACCTTAAAGAGCTTTCATCTTCATATTCCAAAACTAAGTATTGTGGGAAAGAATAACAGAGCACCCTAATCTCTTCGATTTTGCATCTAGCAGTCTCTGAAAATTCTTGCAAATTGGAGTCGGCAGCCTTCGAAGCTCGGCCATATATTGTTTCCGTTTTTCTTTGGCATCCAAAAGAAGGAGCGAACTCATGCGAGCTCGCCGGGGGCGGGCTTTCGCCTTCGCCCTCTCTTCTCCGACGTGAAGCAACGACAGTCGCTGCCATTTATCCATCCCCTCTTCAATGGAAGGATGGCTGGTCTCGGAGGACGACACGTCTTCCCATAATGTCCTCCACAGCTTTCGAAAGCTTCAAAGCGTTCGCTGTTACTCTGATGTCGAACATATCTCCGACGCTTCTCGTTTCGAACAGATTCTCTTAGATTTCTTCAAGAAATTTCACAGCAAGCTGAAGATCCCACCATTTCCAGCCATGCTTGGAGACGGGAGGCCGATGGATTTGCACAAACTCTACATCGCAGTTTCTGAGAAAGGCGGATACGATTTTGTGACGGCCAACAAGTGTTGGGCTTTGGTAGCAGAAGCAATCGGATTTGATTCGGCTTATGGGTGTCCCTTGAAGCTGATCTATGCTAAATACCTTAGTACGTTAGAGGGTTTTTTGTGGAAGGTTCCCGCCAACAACTTGGGCGTTGGGGGCTATTCAAGGTCTGAAGAGAATCTAGGAATTTTGATGAGTGACTCGGAGTCTGAGGTTAGAGGTCTTTTTAAGGAGATTCTGAAACAAAAGAAGAAAGATGGCACACTATCGCCATTCTCTAAGCGGGATCAGTTCTTGGCTCCTTCAAGGCAGAATGCGCCAGCATTGCTGCTTGGTAGTTCCAACTCTGTTCAACCAAATGATTCATCTGCTTTGAATCCAGTGGTGGTTAATGGGAATTCCTCGTCACTTAAGAGGAAGAGGGAGTCATTGCAGGACATGTTGAATTGGGTGAAAAGTGTAGCCACAAATCCTATTGATCCTTCTACAGGAAATGTTCTGCCATCCGATGGCCTGAGAGATATCGAAAATGTGATTGGTGTGCATTATTCTCATGCATTTGAAGCTCGCAAGGCATTATTTCTGAAGAGAATTCGTGTAGAGGGCAATGATACCTTTAAGTTGCAGGTTGATCAAAAGATGCAACCTTCGGTTCTGGAGAAGCCTAAGATTACTACTAATCCAAGCCTCCAAACACCGAGAAGCAGCCAGAACACTCATTCCTCGGACAAGCCATCCCATTCTGGTACCTGTTCGAAGGCATCCACAGTTTGCGCCGGCGAGAAGGATGACTGCCACATAGACACAGCAAATGAGGCCAGCCATTGCAGACGAACGCCTCGAGCCTCTTTATCGCTGCCAGACTACTTGAATGATTCCGTGCTTCAGCGTATACCTGTGGGCCCATCTTTTCAAGCTGCAGTCCCTACATGGGCCCATGAGCCCGTCACTCCGTACAATCCTGATGACTTGAAATGGCTGGGAATAAGAATCTGGCCCCCGGAATATCACGAGAAGAAACTGCAGCCGACAAAATGTAATCAGATCGGGAAGGGACGGGTGGACGGCTGCAGGTGCGTGTATCCTTGTTCGGCGGAGTGCGTCCGATTCCACGTCGCCGAGGAGAGGCTCCGGTTAAAATGCGAGCTGGGGGCAGCCTTTTACGCATGGAGATTTCATCTCATGGGCGAAGAAGTGGCGCTGTCGTGGAGAGCGGAGGAGGAGCAAAGATTCAAGGCCACGATCCGTCTGAATCAGCAGACACCCCACGCCCGAAATTTATGGAAGCAGCTTCATCTGTGCTTTCCCGGAAAGGGAACCCGGAGGCTGGTGAGCTATTACTTCAACGTTTTCCTCATCGCGCGCAGGAGCTACCAAAACCGAGTGAGCCCCAACAGCATCGACAGCGATGACGAGGAGGCCGAATTCGGTTTTCTGAGCTCTGCCCTCAGCTACGGCGCCATGAGATTTGATGATCACAGATTCGTCATTTGTGCTCAGAATTCACAGTGCGTTGATCTTGGCGACTAGCTGCCTGCCGCGAGAATTAGCCTTCGAACTCCATCTTGAAGGGATACATGCCTTGTTTTGGGAAAATATCATATGCTTCAACACTCTGAAGGATGTCCTTAAAAGGAGTATTAGTGCAAGGAAAATGTTAAGTGCTCAACAAATAACTCAAAACACTTGAAAATGAAGAAAAATATAAAATTGAAAAATTATGATCTTGCCCCCTCTCTCTTCACATTTATTTTTTCACACGTTCTGAATTATTTGTTGGGCACAGTAATAGAGCTCTTAGCCCAAACACTGAACATTGGATGTGGGTGATATTGCTTAGTTGTACAAAGGGGATTGGTGCAATACGCTTTTGTGGGCCCGCATTGCTCTTGTCTGTATCTTTTTTTGGTTTTTTTCCTAACATCTGATAGTTTGGGATGTTTGGGGGGCAGTTTTGGGGGCATCGCAGCAGTTTCCTATCCCATAAAGGATTGTCACAAATTCTGGGAAAGGAACACCAGACGAGTATTTGCTTTTCGCTATTGTATGATTATTATTAGAACTCTCTTTTATGTGTAAATTGCATGCGGCAGATTTCTGAAATTATATCGTCTGGTTGAGATAAATATTACTGTGGTGTGTTCTTCTTAAGTTTGGATCAGTTGTGGATCATCAGGTTATTAGCAAGAGATAATTATGAAAATGCTTCAGCT

Network for GWHGAAEX005177

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01388.20	ARID	49	123	1.80E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	ARID

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	43.210
SRP064423	SRR2545915	Juvenile tuber	40.060
SRP108465	SRR5643513	five period of Gastrodia elata	26.970
	SRR5643514	five period of Gastrodia elata	21.850
	SRR5643515	five period of Gastrodia elata	19.570
	SRR5643524	five period of Gastrodia elata	19.880
	SRR5643525	five period of Gastrodia elata	22.820
	SRR5643528	five period of Gastrodia elata	14.600
	SRR5643658	five period of Gastrodia elata	16.800
	SRR5643659	five period of Gastrodia elata	36.530
	SRR5643660	five period of Gastrodia elata	38.100
	SRR5643661	five period of Gastrodia elata	39.740
	SRR5643662	five period of Gastrodia elata	36.320
	SRR5643663	five period of Gastrodia elata	37.970
	SRR5643664	five period of Gastrodia elata	40.340
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	32.200
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	30.950
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	32.250
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	31.290
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	27.860
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	29.110
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.210
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	28.210
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.640
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.800
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	27.060
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	27.060
SRP279888	Gastro	Gastrodia elata tuber	32.61
	Juven	Juvenile tuber	65.48
	Mother_Gastro	Mother tuber of Gastrodia elata	16.60
	Mother_Juven	Mother tuber of Juvenile	29.21