Gene detail

Detail information of GWHGAAEX005184/evm.TU.scaffold_16.137

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|159901275\|ref\|YP_001547522.1\|	5.00E-14	Poly(ADP-ribose) polymerase catalytic subunit [Herpetosiphon aurantiacus DSM 785]
KOG	KOG1037	0	NAD+ ADP-ribosyltransferase Parp, required for poly-ADP ribosylation of nuclear proteins
nr	gi\|743825708\|ref\|XP_010933094.1\|	0	PREDICTED: LOW QUALITY PROTEIN: poly [ADP-ribose] polymerase 1-like [Elaeis guineensis]
Swissprot	tr\|Q7EYV7\|PARP1_ORYSJ	0	Poly [ADP-ribose] polymerase 1
trEMBL	tr\|M0SRX9\|M0SRX9_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P25180_001}
TAIR	AT2G31320	0	poly(ADP-ribose) polymerase 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000024	4166240	4205133	-

Transcript Sequence
>GWHTAAEX005184 AAGAGTCGGAGTCCGTCACTTGCTTGTTTCATTTTGATATCCATATATCCACAACAGTATGCTAGCTTTCTGAAGAAGATGGTAACAATATGCTAGCTTTCTGCTTTTTTCACTGAGTTCCTCTCGAAAGCCCATCAATGGCGGCCCCGGCTCATTCTAAGCCATGGAAGGCGGAGTATGCGAAGTCTGGAAGATCCTCCTGCAAGACCTGCAAGAGTGTCATTGACAAGGACCAGCTTAGGCTGGGCAAAATGGTTGTCGCCACACAGTTCGACGGCTTCATGCCTATGTGGAATCATGCTGGTTGCATCTTGAAGAAAGCCAACCAAATCAAAGCATTTGATGACGTTGAAGGTCTAGACTTACTTCGATGGGAGGATCAACAAAAAATCAGAAAATATGTGGAATGTGCAGCCTCAGCATCTACACCCAGTGCTGGAAATGTTGAAAATACCATTGAGGTTTCTCAAACTTCTCGTGCTACCTGCAAACACTGCAGTAACAAGATTTTGAAAGGAATGGTTCGCATTTCAACCAAACTTGAAGGTCAGAGCTCCAAAGGTCTGGCTTGGCATCATGTTAGCTGTCTCCGTGAAATCTTTCCATCACTAAATGTAGAGAAAGTATCTGGCTGGGACAACTTACCATCCCAAGAAAAAGAAACTCTATATGCAGTATTTAAGAAGGATGCAAGTAATGCTAAGAGTGGTACAAAAGCGGCTTTGCAACAAGCAACTACAAGAGAAACCAAACGCAGGAAAGTTGAGACTGATCAGAAGAGCTCCAAAACTAGTACAACTGCTGGAAATGAAACAAGTGGAGAAAATGCTGATCTTGAAATGAAGCTGGAAGAGCAAAACAGGGCTTTGTGGGCTATTAAAGATGAGCTTAAGAATCAGGCTACAACTCCAGAACTTCGTGAAATGCTTGAAGTTAACGAGCAAGATTCAGCAGGATCAGAATATGATTTACGTGAGCGTTGTGCTGATGGAATGTTGTTTGGAGTGCTTGGGAAATGCCCTTTATGTTCTGGCTCTTTGCATTACTCTGGAAGTTTGTACCGCTGTCATGGCTATGTGTCAGCATGGAGCAAGTGTTCATATGCAACTTCTGAACCTGTGCGTCTGAAGGGGAAGTGGAGAATTCCAGAAGGCACAAGTAATGAGTACCTCTTAAAGTGGTTCAAGTCACAGAAGGCTAAAAAACCCATCAGAATACTTCCTCCTCAATCATCTTTTAAAAATCTGGGTACCATATCTAGTGGCATGCAGTGTCAACCCTCTTCTGGTGACAAATTGGAGAATTTGAAAGTAGCTCTAACTGGAGATTTTGGAAATGAAGTGGAGGATTTAAAGCGGAAGTTTGTCGAGTATGGAGGAAAGGTTCATTCAAAGATTAACAAAGATACTAGCTGTTTAATTGCATGTGGAGAGGTGCAGGTTTCAGATCCTGAAATTAAAAAAGCCAGGAGGTTGGCAGTGCCGATTGTGAGGGAGAGTTATCTTGGTGTTTGTATAGAGAATATGAAGAAGCTTCCTTTTGAATCTTATAAAGTGGAACTGGCTGGTGAGAACATGACTGGAATGGTCACCGTGAAAGTGAAGGGCCGCAGTGCCGTACACGAGTCCTCTGGCCTTCAGGATTCAGGTCATATTCATGACGATGGCAAAAGCATATATAGCACAACGTTGAGTATGTCCGACTTATCAACTGGTATCAACAGCTATTACATACTTCAGACTATTCAAGAGGACAAAGGATCTAATTGTTATGTATTCCGTAAATGGGGAAGAGTTGGTAATGATAAAATCGGGGGGAATAAATTGGAAAGATTGCAGCTATCGGAGTGCATTACAGAATTTAAACGTCTCTTTCTTGAAAAGACTGGAAATTATTGGGAGACATGGGAGCAAGGTAATTTTGAGAAGCAGCCAGGAAAATTTTGCCCTCTTGACATTGATTATGCGGTTAAACCAGCATCAAAAGTAAAAATTCCCAAGAATTTGGAGAGTAAGCTTGCTTCGCAAGTCCAAGACCTGATGAAAATGCTTTTCAATGTTGAGACATACAGGGCTGCTATGCTGGAATTTCAAATTAACATGACTGAAATGCCTCTGGGAAAGCTTAGTAAGAAAAACATTCAGAAGGGTTTTGAAGCTTTAACAGAGATACAAAATTTATTAAATAATAGTAATGGCTATGAACCAGCTGTTAGAGAAAGTTTGATCGTTGATGCCAGCAATCGTTTTTTTACCCTTATTCCTTCCATCCAACCACATGTCATTAGAGGGGAAGATGATTTCAAGGCAAAGGTAAAAATGCTGGAGGCTCTTCAAGACATAGAAATTGCTTCCAGGCTTGTTGGTTTTGATGGAGAAAATGATGAGACACTGGATGAGAAATTTGCAAAACTCCAATGTAAAATTGATCCTTTGCCTCATGAAAGCGAAAATTTCCAAATGGTCAGGAATTATCTTCTTAATACTCATGCTCCTACGCATAAGGATTGGAGCCTTGATTTGGAAGAGGCTTTTGTTCTTGAGAGGGAGGGAGAATTTGACAAGTATGCACCATACAGAGATAAGCTAAAGAATAAAATGCTCTTGTGGCATGGTTCTCGGCTGACAAACTTTGTTGGCATCCTCAGCCAAGGCTTGAGAATAGCACCTCCCGAAGCTCCTGTGACTGGCTACATGTTTGGAAAAGGCGTTTATTTTGCTGATCTTGTGAGCAAGAGTGCACAGTATTGCTATGTTGACAAGAATGATCCAGTTGGGCTAATTCTGCTCAGCGAGGTTGCTCTTGGAGAGATGTATGAGCTCAAGGATGCTAAATATATGGAAAAACCACCCAGAGGGAAGCATTCAACTAAAGGGCTGGGCAAGACTGTTCCTCTGGAATCAGAATTCGTCAAGTGGAGGGATGTGACGGTGCCTTGTGGGAAGCCGGTGCCCTCTTCAGCTCGAGCATCAGAGCTCCTCTATAATGAATATATTGTCTATAATACTGAGCAGATAAAGATGCAGTTCTTGTTGAAGGTGAGATTCCATCACAGGAGGTGAAACGAAATATACAGTTTCAGGCACTAGTATTTTTGGTTTTTTGCTGCCATTTTGTGTTTGGGTTTGAGAAAAATATGCAAAAGATTCAACCTTTATTTTTGAAATTCTATCAGAAAGCATCCTTGTTGTATTGTTTCTTCAGAGTGAATCATTATGATGCTTTGCTGTTACTGCAAATATTGGATGAATGCAGTTTTTTTTAATGAAATATAATTGATACCTTTTAAACACTACAATGATGATGATAGTTTATTTTCAGGGATACTATGTTATACATGCAGAA

Network for GWHGAAEX005184

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00645.17	zf-PARP	13	89	1.90E-19
PF00645.17	zf-PARP	108	177	1.50E-13
PF08063.11	PADR1	280	329	3.30E-20
PF00533.25	BRCT	385	460	1.20E-05
PF05406.14	WGR	514	592	3.70E-16
PF02877.13	PARP_reg	625	755	1.10E-36
PF00644.19	PARP	770	970	3.70E-71

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10798	PARP	Base excision repair	map03410
		Apoptosis	map04210
		Apoptosis - fly	map04214
		Necroptosis	map04217
		Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0006471	Biological Process	protein ADP-ribosylation
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0008270	Molecular Function	zinc ion binding
GO:0003677	Molecular Function	DNA binding
GO:0051287	Molecular Function	NAD binding
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	30.860
SRP064423	SRR2545915	Juvenile tuber	21.970
SRP108465	SRR5643513	five period of Gastrodia elata	18.340
	SRR5643514	five period of Gastrodia elata	19.440
	SRR5643515	five period of Gastrodia elata	14.560
	SRR5643524	five period of Gastrodia elata	16.500
	SRR5643525	five period of Gastrodia elata	15.940
	SRR5643528	five period of Gastrodia elata	13.800
	SRR5643658	five period of Gastrodia elata	13.700
	SRR5643659	five period of Gastrodia elata	12.150
	SRR5643660	five period of Gastrodia elata	12.020
	SRR5643661	five period of Gastrodia elata	12.610
	SRR5643662	five period of Gastrodia elata	11.900
	SRR5643663	five period of Gastrodia elata	9.970
	SRR5643664	five period of Gastrodia elata	12.230
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	20.330
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.350
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	19.550
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	19.590
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.650
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	19.050
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	19.530
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.690
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	22.540
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	22.190
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	19.640
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	19.640
SRP279888	Gastro	Gastrodia elata tuber	10.92
	Juven	Juvenile tuber	20.65
	Mother_Gastro	Mother tuber of Gastrodia elata	14.94
	Mother_Juven	Mother tuber of Juvenile	16.60