Detail information of GWHGAAEX005188/evm.TU.scaffold_16.141


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|586645314|ref|XP_006827521.1|6.67E-21hypothetical protein AMTR_s00009p00194700 [Amborella trichopoda]
Swissprottr|Q9SR34|TAC1_ARATH1.00E-11Transcriptional regulator TAC1
trEMBLtr|W1NGL5|W1NGL5_AMBTC2.00E-21Uncharacterized protein {ECO:0000313|EMBL:ERM94937.1}
TAIRAT3G538203.00E-14C2H2 and C2HC zinc fingers superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002442967764297492+
Transcript Sequence

Network for GWHGAAEX005188

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2H2

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.000
SRR2545915Juvenile tuber0.150
SRP108465SRR5643513five period of Gastrodia elata12.180
SRR5643514five period of Gastrodia elata8.100
SRR5643515five period of Gastrodia elata2.500
SRR5643524five period of Gastrodia elata5.580
SRR5643525five period of Gastrodia elata0.000
SRR5643528five period of Gastrodia elata0.140
SRR5643658five period of Gastrodia elata0.110
SRR5643659five period of Gastrodia elata0.000
SRR5643660five period of Gastrodia elata0.000
SRR5643661five period of Gastrodia elata0.000
SRR5643662five period of Gastrodia elata0.000
SRR5643663five period of Gastrodia elata0.000
SRR5643664five period of Gastrodia elata0.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.060
SRR6049655Rhizomagastrodiae_C368-T10_good_122.820
SRR6049656Rhizomagastrodiae_C368-T07_good_132.040
SRR6049657Rhizomagastrodiae_C368-T07_good_17.220
SRR6049658Rhizomagastrodiae_C368-T04_good_19.890
SRR6049659Rhizomagastrodiae_C368-T04_good_19.700
SRR6049660Rhizomagastrodiae_C368-T01_good_11.110
SRR6049661Rhizomagastrodiae_C368-T04_good_14.090
SRR6049662Rhizomagastrodiae_C368-T01_good_19.020
SRR6049663Rhizomagastrodiae_C368-T01_good_16.050
SRR6049664Rhizomagastrodiae_C368-T10_good_141.930
SRR6049665Rhizomagastrodiae_C368-T10_good_141.930
SRP279888GastroGastrodia elata tuber 0.00
JuvenJuvenile tuber0.00
Mother_GastroMother tuber of Gastrodia elata 0.62
Mother_JuvenMother tuber of Juvenile 0.00