Gene detail

Detail information of GWHGAAEX005189/evm.TU.scaffold_16.144

Functional Annotation

Database	Orthologs	E value	Annotation

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000024	4323218	4339002	-

Transcript Sequence
>GWHTAAEX005189 ATGGCTTTGTGCTCGAATGGTCATTGCCTTGGTTTCTTAATGCTAGATAAGATTATCTTTATCTGCAATGTTGTGTTGGAGGTACCTTCAGAAGTGTGCTTAATTTCTAATATTTCCTTGCTTTTCGTTGCTTATGATGGTATTTTTTGTAGTGTTCTGATGCTTTCTATTTTGCCAAAAATCATTGGTGATGTGATTCCTTGGCCGGTGTTTGATTTAATTTTGGCTCACGTTGCTCTTAATGCTATTTCTGGAATAGTTTGTTTACATAGCTTTTCACTTTGCGATTCTGAGATGGCTCACGTTAATTCTCCTGCTATTTCCATTCTTATTTTTCTCGGTTCTTGTGATAGTGCTGCTTCTATCATCTCCTCTCAAATGGTTTCTGCTCGTTCGCCTTATTTTGTCTTAACTACTGGTTTATTATTGGGATTATTGTTGGTTTCTCTAGTGCACCCTCCTTTGGTTTTGTTAAAAGTGGTGGGATCTGTTGATTTTATTGAAAGTGATGCGGTTGGTTTGACTTTTTGCCCTGTGGGCAGAATTGTTGGTTGCGGTAGATTTCTTATTGCAGGTTTCTTCGCGGTGGTTGTATTGTTAGTTGCTGTTTGGATTTTCGTGCTGGTCGGCTTTGGTGGCGTGGCTATCTTGTATAAAGGTATCCAGTGGTTAATCCTTGGTGGAGGCATTTTGAGGCTCAGCTCTCTTCATTCCATCTCCTGCTTTGGGAGGGTGTCTATTCTTGATCTGCTGCATGTGGCGCAGCCCTCCCTTGTGCGGTCGCAAGTGGGAGCCGCCACCTTTTCCTCCTTGCGGGAGAGCATTGGCCGCCTCGTCCACTTCTCCATCCCCACGTCCGAGTCCCTCAGCCGAGAGGCTTTCGCCGATCCGTCTCCAAGCACCCGCCACCTCTTCCTTTTGGCGCCGGTTCGCCCAACTCCGCCGTCGAGCAAGCTTTTCTCTGTAGTCGATGATTTACGATCACACCTTTGGGTTCTTCTTTTGGATGGCAGCAAGGTTAAAATTATATTTGATGGATCCGGCTCTCTTTTCTTCACCTTGTGATCTGTAAAGGCTTCCACCAACTTTGCAGCAACTCTGTTTGATTTTGGTTACTACCATTAGTCCACTGGTGTCTCTATCTAGCCTGTTGGCTAGGTGAAGATTTGATTCCAGTATTGGTGTTCCTGCGATCAATCAGTCGGTCTCAAGCATTCTAGTAAGATGGAAATGATCATTTGGTTTTAAGAAAAGTAAAAACAGATTTATGACATCTGTCACTCATGCAATTATCTGTTACAATCCATTGTGAATGCAATTTGAGGTGCTTATACTTTGCTGTATTTTTTTTTTTAATTAAAATTTCTTGTGTTTGATTGTTTACACAGTCAGTGAACTCATCTCACATTATGCAGCAGCTCTTGTAATAAAATGATGAACAGATTTTCAATAGATTAGTATACAAAAGCTGCTTATAGTAAAAGGAATTATAATTTCTTCATAGAGCAAATGTGTTGACAAAAGTTTCACAACCAACTTCATATGAAAACGGGAAGTTTATCCACCCAAGCTTAAATCATCACAAGATTTTTCAATATGTAGCTAACAAGTCATACCACCCACAGGCAATTTAATTATTTTTTTTTTATATATAAATATGCCAATAGTTTTACTAGAGAGATAAATCGCACTATAAGTCAACAAGGTACTCACCTCATTGTCCTGCATCATTGGCGTCGATATAGGAGGAGCAGCATCTGGA

Network for GWHGAAEX005189

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.040
SRP064423	SRR2545915	Juvenile tuber	0.100
SRP108465	SRR5643513	five period of Gastrodia elata	1.000
	SRR5643514	five period of Gastrodia elata	1.770
	SRR5643515	five period of Gastrodia elata	1.270
	SRR5643524	five period of Gastrodia elata	1.320
	SRR5643525	five period of Gastrodia elata	1.530
	SRR5643528	five period of Gastrodia elata	1.420
	SRR5643658	five period of Gastrodia elata	1.690
	SRR5643659	five period of Gastrodia elata	1.380
	SRR5643660	five period of Gastrodia elata	0.970
	SRR5643661	five period of Gastrodia elata	2.060
	SRR5643662	five period of Gastrodia elata	1.500
	SRR5643663	five period of Gastrodia elata	0.990
	SRR5643664	five period of Gastrodia elata	1.800
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.640
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.770
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.080
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.580
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.440
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.180
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.520
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.130
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.540
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.450
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.450
SRP279888	Gastro	Gastrodia elata tuber	0.98
	Juven	Juvenile tuber	1.10
	Mother_Gastro	Mother tuber of Gastrodia elata	4.30
	Mother_Juven	Mother tuber of Juvenile	3.40