Detail information of GWHGAAEX005198/evm.TU.scaffold_16.157


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08003.00E-45FOG: Predicted E3 ubiquitin ligase
nrgi|672128137|ref|XP_008787548.1|1.63E-48PREDICTED: RING-H2 finger protein ATL16-like [Phoenix dactylifera]
Swissprottr|Q9LSW9|ATL16_ARATH8.00E-46RING-H2 finger protein ATL16
trEMBLtr|M0SZY9|M0SZY9_MUSAM9.00E-47Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P19600_001}
TAIRAT5G434203.00E-45RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002448674294868503-
Transcript Sequence

Network for GWHGAAEX005198

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_2991422.20E-14
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.790
SRR2545915Juvenile tuber2.370
SRP108465SRR5643513five period of Gastrodia elata34.000
SRR5643514five period of Gastrodia elata19.310
SRR5643515five period of Gastrodia elata20.130
SRR5643524five period of Gastrodia elata30.610
SRR5643525five period of Gastrodia elata2.340
SRR5643528five period of Gastrodia elata0.830
SRR5643658five period of Gastrodia elata1.880
SRR5643659five period of Gastrodia elata15.750
SRR5643660five period of Gastrodia elata13.240
SRR5643661five period of Gastrodia elata18.960
SRR5643662five period of Gastrodia elata14.510
SRR5643663five period of Gastrodia elata13.430
SRR5643664five period of Gastrodia elata10.320
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_122.140
SRR6049655Rhizomagastrodiae_C368-T10_good_125.540
SRR6049656Rhizomagastrodiae_C368-T07_good_132.610
SRR6049657Rhizomagastrodiae_C368-T07_good_117.180
SRR6049658Rhizomagastrodiae_C368-T04_good_115.390
SRR6049659Rhizomagastrodiae_C368-T04_good_112.930
SRR6049660Rhizomagastrodiae_C368-T01_good_121.950
SRR6049661Rhizomagastrodiae_C368-T04_good_112.670
SRR6049662Rhizomagastrodiae_C368-T01_good_114.700
SRR6049663Rhizomagastrodiae_C368-T01_good_123.510
SRR6049664Rhizomagastrodiae_C368-T10_good_144.920
SRR6049665Rhizomagastrodiae_C368-T10_good_144.920
SRP279888GastroGastrodia elata tuber 17.62
JuvenJuvenile tuber14.54
Mother_GastroMother tuber of Gastrodia elata 6.06
Mother_JuvenMother tuber of Juvenile 9.69