Gene detail

Detail information of GWHGAAEX005200/evm.TU.scaffold_16.159

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672177182\|ref\|XP_008808678.1\|	0	PREDICTED: uncharacterized protein LOC103720648 isoform X1 [Phoenix dactylifera]
trEMBL	tr\|M0T239\|M0T239_MUSAM	3.00E-134	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P27140_001}
TAIR	AT2G47350	6.00E-73	HIT zinc finger ;PAPA-1-like conserved region

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000024	5017583	5034078	-

Transcript Sequence
>GWHTAAEX005200 CCTAATCGAATCGCTGCCCTAAATCGCTCGACCGACCCCCTTCGCTCGCAACTCCTTCCCCCTCGCTCTCGACCGCACGCGACCGAGCTCCCTCTCGCCAATCGCACGCATCGGCCTCGCCTCTCCTCCCGCCACACGTCGCCTCTGCCCTAAGAGTCTCCGCCACTCACCTCGCATAGTAAGCTCCGCCCCCTCTTAGCCTAAATCTACTAAAAGCGAATGCTTCACCTCTTATTCCTCTTCTTCCTCTCAACCGACTCCCTTCACCCTCTCTGCCAAGCGACGCAAGGCGTGCGGCTCTCCCTCGCGGTCTCCATTGCGGCCGAGCCCCCCTCCTCCATTTGGCGTTCGACAGCGAGGAGTCACCGATCTTCCCTTCAACACATCAAGGTTGTTTAAGTGAGCTGTTTTTCCTGTGTATTCTGCAAGACTTTGAATTTGATGGAGGGTGTGGGTTGTTCTGGATCAGGACAGGCTGCTACTTCTGTGGTTAAGAAGAGGAGGAGTTCATCTTTAAGAAGGCCTAGACAAGGATCACCATTCAATTTTGGGAGCTGCGACCCATCACCACTTTCTTCTACACCTTCTTCTGAGAATGCAAACAAGCTTTCTCCTGATGACAGTTCAGGATATGATGGCTACTCACGCAGGAAAGAAATTTATCTCAATTACCCTCCTCCTAAAGTTGCTTCTCTTAGTAAATTTGATGATGCTGCTCCATCAAGGAAGAAAAGGAAAGATGATAAAGCTAATGGAGATTTTGATGCGCATTATGTGAGCAGCAGTTTCAGAGATCATGGGTTGAATGTATCGAATGTGAAACGAAGCAGCGAAGGTGTTCTTGCTCCTTCTAACTGGAAAAACTCAAGCAAATTTAAGGAGAACTTTGATATACAGTCACCATCCCCCGAACCGTATGAACATAATAACTTGCATCAGTTAGCTTTATCTTCTGGCGCCTTAAATGAGAGCAAGCTGAAAAAAGTGAAGCTTAAGGTTGGTGGGGTCACTCGCACTATTCCTGCTAAATCTAGCATTGAAACTGATGGCAACATTGGATCTTCTTCGCTCTTGAAGTATTCACGCTCGTCAGATAGCAATAGGCATCGGCCAAAGATCATCTCTCAGGATAATTTGGATGCCAACCTTTCTCCTCGAGAAAAGGGGCATGGCTCACGTGGAGACCTTTGGAAGTATGGTGGCGGAGCAAGTTCTCATAGAAGTAAAAGTACAGAGGAAAGTTTATCTGGAATGCAAAGGGATCAAAATCAAGGTGTACCCTCTGAACCCATTCGGAAGAGCAGGAGGGTGCCGAAGAAGCGGGTTTTGGATAGTGAATTTGATGATGGTGAAGAAGATGCAGAGCTCCGTTACATTGGAAGGCTCAAAGCCTCTCGGAGTTCTTTTGATTGCATCACAGAAAATGAAAAAGATAGGGACGATGGGAGCAAAAAAAGAAAACTTTCCAAGGCTGCAACTAAAATTAGGAGTACATATATGATGGATGAGGACTTCAACATTTCGAGAATGACTAAAGATAGCAGGAGAAAGTCCAGAATATGCAGGCTATCTGAGGATAGCGACTATGTTGAAGAGGATGAGCCTGTTTCCGATGATAATCCCGAAGAGAAAAGGAAGAGGCAGAAGAAACTAGCTGCTGATTCATCTCCTGATGTCAGACTTGAGCCTCTCACAACGCGGCAGCGAGCTCTGCAACCAGGCAAAGATGGAAGTAGCTCGAGCTTGATTGAGTTTCCTGATGGGTTACCTCCAGCTCCTCCGAGAAAACAAAAACAGAAGCTTTCTGAGGTGGAGGAGCAGGCTAAGAAGGCTGAAGCAGCTCAGCGGAGGAAAATGCAAGTGGAGAAGGCTGCTAGAGAATCAGAGGCTGCAGCAATTAGGAAAATACTTGGACTGGATTCCGATAAAAAGAAGGCTGAAAAGGAGAAGGCTCAAGCAGAAAAAGCCAAGGCTGCTAATTACCCTTTATCAGAGGGCAATAGCATAAGATGTGTTATGGGACCTTCTGGCACAGTTGTTACATTTCCAGATAGTGTTGGCTTGCCAACCTTATTTGATTCCAAGCCGTGCAGCTATCCTCCGCCAAGAGAGAAATGCGCAGAGCCATCTTGTAGAAATCCATACAAGTATCGGGATTCTAAATCAAACCTTCCTCTGTGCAGTTTGCACTGTTACAACGCTATCCGGGAAACTGTCAGTCACATTGTATCATGCTGACAATCTTCTCTCATTCATGGTCTTTTGATCTCAAGCTAAGTGCTACCTGGCGGAGTCTTCCTGACAGCCTCAAAACATTATTTTGGGCTGTGATTTCGGCTGTAAAGCAGTTCTCACATATATAGAGTATCTATCCTTTGCATCAGCACACTAACTTGTTGAGGCTAAAGATTCTATGTAGAATTTATTCTCTTGATTTTTGAACTTACGTGGAAGAACTTTGAAACTAATTTCATATGTATTTTGTTATGCTGCGGTGCTTCTCTCATTTTAATCTTCATGCTTGAGAGATCTCATAATTCATGATTTTTTATGTTCATCTTTTTTCATGTATTCTGCTCAAAGATGATGTGGTGTGAACTTGTTACGTTGTAATTTAATTGGTAGTGTTAGGGCTATGATAAATATTTCTTAGGATTTTAAATTTAAATATTTAGTTCGGTGTATTATGATTGCAACATCATTTGTTCTAAGAAAAAAAACTGAAATCTAGTTCTTACAAGCTTTGGTAA

Network for GWHGAAEX005200

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04795.11	PAPA-1	458	538	6.30E-19
PF04438.15	zf-HIT	555	586	4.20E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0031011	Cellular Component	Ino80 complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.690
SRP064423	SRR2545915	Juvenile tuber	1.770
SRP108465	SRR5643513	five period of Gastrodia elata	2.240
	SRR5643514	five period of Gastrodia elata	2.660
	SRR5643515	five period of Gastrodia elata	2.660
	SRR5643524	five period of Gastrodia elata	2.280
	SRR5643525	five period of Gastrodia elata	2.580
	SRR5643528	five period of Gastrodia elata	2.570
	SRR5643658	five period of Gastrodia elata	2.420
	SRR5643659	five period of Gastrodia elata	2.590
	SRR5643660	five period of Gastrodia elata	3.580
	SRR5643661	five period of Gastrodia elata	2.440
	SRR5643662	five period of Gastrodia elata	2.800
	SRR5643663	five period of Gastrodia elata	2.760
	SRR5643664	five period of Gastrodia elata	2.820
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.330
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.490
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.400
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.570
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.420
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.290
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.000
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.250
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.250
SRP279888	Gastro	Gastrodia elata tuber	1.10
	Juven	Juvenile tuber	4.96
	Mother_Gastro	Mother tuber of Gastrodia elata	2.08
	Mother_Juven	Mother tuber of Juvenile	7.49