Detail information of GWHGAAEX005207/evm.TU.scaffold_16.175
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|296133663|ref|YP_003640910.1| | 5.00E-78 | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola potens JR] |
| nr | gi|672109313|ref|XP_008789537.1| | 0 | PREDICTED: uncharacterized protein LOC103706995 isoform X1 [Phoenix dactylifera] |
| trEMBL | tr|D7TXZ8|D7TXZ8_VITVI | 1.00E-158 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI35373.3} |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000024 | 5430194 | 5433841 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005207
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01225.24 | Mur_ligase | 114 | 160 | 0.00012 |
| PF08245.11 | Mur_ligase_M | 197 | 398 | 1.70E-29 |
| PF02875.20 | Mur_ligase_C | 420 | 481 | 4.80E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0071555 | Biological Process | cell wall organization |
| GO:0009058 | Biological Process | biosynthetic process |
| GO:0016874 | Molecular Function | ligase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0047480 | Molecular Function | UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.830 |
| SRR2545915 | Juvenile tuber | 2.230 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.320 |
| SRR5643514 | five period of Gastrodia elata | 3.750 | |
| SRR5643515 | five period of Gastrodia elata | 3.490 | |
| SRR5643524 | five period of Gastrodia elata | 4.710 | |
| SRR5643525 | five period of Gastrodia elata | 2.930 | |
| SRR5643528 | five period of Gastrodia elata | 4.350 | |
| SRR5643658 | five period of Gastrodia elata | 2.730 | |
| SRR5643659 | five period of Gastrodia elata | 1.460 | |
| SRR5643660 | five period of Gastrodia elata | 0.600 | |
| SRR5643661 | five period of Gastrodia elata | 0.910 | |
| SRR5643662 | five period of Gastrodia elata | 1.140 | |
| SRR5643663 | five period of Gastrodia elata | 1.020 | |
| SRR5643664 | five period of Gastrodia elata | 1.270 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.200 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.150 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.920 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.630 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.350 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.580 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.650 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.930 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.050 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.050 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.21 |
| Juven | Juvenile tuber | 7.05 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.74 | |
| Mother_Juven | Mother tuber of Juvenile | 4.60 |