Detail information of GWHGAAEX005209/evm.TU.scaffold_16.177
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|48477744|ref|YP_023450.1| | 8.00E-114 | ATP-dependent DNA ligase [Picrophilus torridus DSM 9790] |
| KOG | KOG0967 | 0 | ATP-dependent DNA ligase I |
| nr | gi|694995831|ref|XP_009390651.1| | 0 | PREDICTED: DNA ligase 1-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q42572|DNLI1_ARATH | 0 | DNA ligase 1 (Precursor) |
| trEMBL | tr|M0RWK1|M0RWK1_MUSAM | 0 | DNA ligase {ECO:0000256|RuleBase:RU000617} |
| TAIR | AT1G08130 | 0 | DNA ligase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000024 | 5483911 | 5515188 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005209
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04675.13 | DNA_ligase_A_N | 129 | 304 | 3.50E-44 |
| PF01068.20 | DNA_ligase_A_M | 372 | 576 | 1.20E-62 |
| PF04679.14 | DNA_ligase_A_C | 601 | 712 | 9.30E-23 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10747 | LIG1 | DNA replication | map03030 |
| Base excision repair | map03410 | ||
| Nucleotide excision repair | map03420 | ||
| Mismatch repair | map03430 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006310 | Biological Process | DNA recombination |
| GO:0006281 | Biological Process | DNA repair |
| GO:0071897 | Biological Process | DNA biosynthetic process |
| GO:0051103 | Biological Process | DNA ligation involved in DNA repair |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0003910 | Molecular Function | DNA ligase (ATP) activity |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003909 | Molecular Function | DNA ligase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 42.870 |
| SRR2545915 | Juvenile tuber | 45.390 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 32.480 |
| SRR5643514 | five period of Gastrodia elata | 35.720 | |
| SRR5643515 | five period of Gastrodia elata | 32.010 | |
| SRR5643524 | five period of Gastrodia elata | 33.940 | |
| SRR5643525 | five period of Gastrodia elata | 32.260 | |
| SRR5643528 | five period of Gastrodia elata | 33.080 | |
| SRR5643658 | five period of Gastrodia elata | 38.370 | |
| SRR5643659 | five period of Gastrodia elata | 27.160 | |
| SRR5643660 | five period of Gastrodia elata | 31.390 | |
| SRR5643661 | five period of Gastrodia elata | 26.740 | |
| SRR5643662 | five period of Gastrodia elata | 37.560 | |
| SRR5643663 | five period of Gastrodia elata | 32.840 | |
| SRR5643664 | five period of Gastrodia elata | 36.050 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 38.160 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 48.090 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 42.460 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 36.840 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 37.990 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 37.950 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 36.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 36.530 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 40.360 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 38.130 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 47.130 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 47.130 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 35.06 |
| Juven | Juvenile tuber | 46.66 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 30.69 | |
| Mother_Juven | Mother tuber of Juvenile | 32.28 |