Gene detail

Detail information of GWHGAAEX005210/evm.TU.scaffold_16.178_evm.TU.scaffold_16.179

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|262195025\|ref\|YP_003266234.1\|	1.00E-38	SNF2-like protein [Haliangium ochraceum DSM 14365]
KOG	KOG1001	0	Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily
nr	gi\|672109303\|ref\|XP_008789492.1\|	0	PREDICTED: uncharacterized ATP-dependent helicase C17A2.12 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9FNI6\|SM3L2_ARATH	4.00E-107	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2
trEMBL	tr\|F6HVZ2\|F6HVZ2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58855.1}
TAIR	AT1G50410	0	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000024	5516052	5589228	+

Transcript Sequence
>GWHTAAEX005210 CAAAACTTTCTTAGTAATAATAGATCCTAACAACAATCCATCATCCATTATCGTGAATGAAGTCTTTGGGTTACAGTAATCACGATACTTCCTAAACAAGAAGCAAATTACTCGCGTATTGTTTTTTCAAAATTCAGTCGGAGCCGAGGAGGTCGAGGACAGCAAGCGGCACTTAGGGTTTGGGAGCTGCTAGAATCCTCGCGAGGGCTTGGGCGACACGTGCGCGCGAGAGGTGGTGGCGCTAGCGCAGCGGTGCAGTTGGCGCCGGCCCGGGCACGCAGACGGACGATCAAGCGCAGCAGCTGTGTGCACATCCCGAGGCAAGGCTATCATGGAGATGCTTTAGGCAGGAAGATGCTTTAAGAAGGCCGGAAGATCGACGCTTGCTGCGACCGGAAGGCAACACCAGATTTTTCTAGTCTTGTGATTTTAGATGCCTGATGGTGCGAATCACTTTGTCCAGTTTCTTGTGCTCTTCTGGGGGAAGTGCACTTCTGTAAGCTACTTCTGTTCACAGATCTTCAATCCTGCTAGCTACTTTTTTTCAAAGTTAATGGAGAACCCATCAAGTCACTCATTCATGCAAACAGAGATCATCAACATTGATTCTTCAGATAGCGATGTTGATGTTGAATTTGATTTCAATGATTTCTTTGATGAGTCCTTTCCAGAGGATGCAACTGCTGAGTCCAGAAACCATTCAGAAATGCTCATTGACCAAAATCATAATATGGGCATACACATCCCCCAGCATCATAGTAATGGTTCTGCCTTATATGCTTCTACAAGCAGCGCACCTTGGACAGTTGTATCTGGTGAATCTCCAGTTATTGTTGGAAGTAATGGTAGAAGTGAAGCAAATTTTTTGTCTTTCGAAGGATCTATTCATAATTCACAACCAAGGGATCTTACAGGGTTGTCACCCCCAAAATCTTACAGAAGTAGCACTAACAATGGAATATTGGATTCTAGCCATGTAGTGAATGAAGGTGGTTTGCTTGTTCCTCAAAAAGAAAATCTTTCTCACTTAATGTCCAGGGGAAACCTTGAGTTGTCTGGTTCTGATGCTATTTGTTTGAACACTAATGCTAAAGTTACACCAAACAATAAACGTATTCTTCCTTCCTCTATGCTAGCACACACATCGGGAACTATATCTTCACCTGGCACAAGATTTCTTGGAAAGGCTTCGATTGCTCAACAGAAAAACCTCATACTAGCTGAAAAGATGAATGCAACTAGAGATGATAATGTTTATAATAATGATAGACTTGATTCAATTTCTAACAAGTATGTTCAAATTAGAAGTCATCTGTCTCATGATCAGCAAAAAAATGCATCAGCTGGGCTTTACAAAGGAATGGGCAATGATCAAGTTACTGAGTTGCATGAAATAGATCATGGTTTTGGTGTGCCAAAAATGTCTGGTTCCAAAATTTATGTGGAAGATCTTGATGAAATGTCTAATAAAAATGATTTATATGACAGGGAACGGAGAGCTTTACCTTCTCATTGGATTGGTAAAACAGCTGGTAGTAGTCAGATTAATTCTTCAATGCATAGCAGGGGTCCTGGTCCGCATACAAATTTTAGCACAAAACCTTCTTATCCAGTGTTAGCAAGTAAAACTTCCAATATACATTATCTTTCGGATCTTTCCATCAGGAATGAGAAGTTTATTTCTTCATCAAAAGGTTTATATAAAGATGATGTTTTTTTACATGAAAATGCACCTGCAACTAGGACTTTGCCTCAATATCCTGGAAAATCTAGTGGCATTCCCAGACTGGCTGGTCTTGATGGTGGAAATTTTTCAGGCTCTGGTGAGCACCGTCAAGAAAATGATGAAACACCGATATATCAAGAGGCACTGCAGAACCTTTACCAGCCAAAACAAGAAGATGATCTACCTGACGGAATTTTGACTGTTTCTCTTCTAAAGCATCAGAAAATAGCTTTGGCTTGGATGATTCAAAAGGAAAGGAGTGTTCATTGTGCTGGTGGAATACTTGCTGATGACCAGGGTCTTGGTAAAACAATATCAATGATAGCTCTCATACTAAAGCAGAAGAATCTTCAGTCTAAATTTACATCAGATTTATCATCATCTGCTAAACCTGAGGCCTTAAATTTAGATGATGATGATGGAAACAATGAACATGACGCGAAAGACATAGGAAAGGATGATCACCAAAAGAAGCAAATGACTAATTCCTCTGAGAATCGCAGACCTGCTGCAGGAACTTTGGTTGTCTGTCCAGCTAGTGTTCTAAAACAGTGGGCTCGTGAACTAGAAGAAAAGGTCTCAAGCTGCATGGAACTCTCTGTTTTAGTTTATCATGGTGGCTCACGGACTAAATATCCTCAAGAATTGGCAAAACATGATGTTGTTCTTACAACATATTCCATTGTTTCTAATGAAGTACCAAGGCAACATGCTGTTGATGATGATGATGAAAATGACCATAGAAATACTGAAAAATATGGACTATCTTCAGAATTTTCTGCTGGCCAGAAAAGGAAGCAGACATCCAATGCAGGAAGAAAGGGAAAGAAAAAAGGTAAAGGGCTTAAAGACTCCCAACTTGATTTTGGCAGTGGCACCCTTGCTAGAGTTCGTTGGTTTAGGGTGATACTTGATGAAGCTCAAACAATTAAGAATCACAGAACTCAAGTAGCTAGAGCTTGTTCTGGGCTTCGAGCTAAAAGAAGATGGTGTTTATCTGGGACACCAATGCAGAATGCAGTTGATGATTTATATAGCTATTTCAGATTCCTAAAGTATGAGCCTTATGCTGTCTACAGTTCCTTCTGTAACTCAATAAAACACCTAATATCAAGAGATGCAAGCCAAGGATATAAAAAACTTCAAGCTGTTTTGAAAACTGTAATGCTTCGGCGTACAAAAGGAACCCAAATTAATGGGGTGCCAATCATTAAATTACCTCCAAAATCAATAAACTTGAAGGATGTAGATTTCTCTCTTGAAGAGCGAGCATTTTACTTGAAGCTGGAAGCAGATTCAAGGCAGCAGTTCAAGGCGTATGCTGCTGCTGGCACCGTCAAACAAAACTATGCAAATATTTTGTTGATGCTTTTGCGACTCCGACAAGCTTGTGACCATCCAGTTCTTGTAAGGGGATATTATTCAGAAGCTGTTGTTAGAGATTCTTTAGAAATGGCAAGGCAGTTACCCAATGAAATGCTATTACGTTTGCTTTATCAACTGGAATCATCATCTAACATTTGCCCTGTATGCAGTGATACACCTGAGGATCCAGTTGTAACAATGTGCGGTCATGTTTTCTGCTATCAATGTGTATCTGACCGTTTAACTGGTGATGATAACGTGTGCCCTGCAATTGGTTGCAAAGAAGTTGTTGGCACTGATTTAGTTTTTTCTCAATCCACTTTAAAAGCTTGTATTTGCGAGGAAACTGTTAGTAATGCTGCCTCAAGTTCAACCACCCATTGTGAGGATTCTTCCATTGTTCATAGTAGCTTTGTTTCATCCAAGATCAGGGCTGCTGTCGATATCCTGAGCTCCCTTCCTAGCGAAAGTTATCGCATCCACCCAACTCAAGAGAGCAATGTTGATTCGAGTACTGATGAACCAATGAAGGCTATTGTTTTTTCTCAGTGGACTGGAATGCTAGATCTAGTTGAGATCTCATTAAATCAAGCACTTATACAATACAGACGGTTAGATGGAACAATGTCCCTCAATGCAAGAGATAGAGCTGTTCGCGAGTTCAACACGGATTCGGAGGTGACGGTTATGCTCATGTCACTTAAAGCGGGAAACCTTGGCTTGAATATGGCTGCCGCATGCCATGTTATTCTTCTTGATCTTTGGTGGAATCCAACGACTGAAGATCAAGCTGTTGATCGAGCACACAGAATTGGACAGACCCGGCCTGTGACTGTTTCCCGCTTAACCATCAAAGATACGGTTGAAGATCGAATCTTGGCCCTTCAGGAGGAAAAGAGAAAGATGGTTTCATCTGCTTTTGGAGAGGACTACGCTGGCAAAAGCCATGCTGCTCGTCTCACCGTTGAAGAGCTTAAATATATATTCAAGATTGATTGACGCTCCCGATTGGCCGAGCTTGTGTGGCCGGGCCCGCTTTTGCATTCAGCCAGCCAATCAGGAAGCACAGTTGGAGCAAAGCATAGCTCATGAGTCATGAATGTATTTTGGG

Network for GWHGAAEX005210

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00176.22	SNF2_N	519	901	2.60E-66
PF13923.5	zf-C3HC4_2	939	975	5.90E-08
PF00271.30	Helicase_C	1059	1158	1.60E-15

Protein Sequence

>GWHPAAEX005210
MPDGANHFVQFLVLFWGKCTSVSYFCSQIFNPASYFFSKLMENPSSHSFMQTEIINIDSSDSDVDVEFDFNDFFDESFPEDATAESRNHSEMLIDQNHNMGIHIPQHHSNGSALYASTSSAPWTVVSGESPVIVGSNGRSEANFLSFEGSIHNSQPRDLTGLSPPKSYRSSTNNGILDSSHVVNEGGLLVPQKENLSHLMSRGNLELSGSDAICLNTNAKVTPNNKRILPSSMLAHTSGTISSPGTRFLGKASIAQQKNLILAEKMNATRDDNVYNNDRLDSISNKYVQIRSHLSHDQQKNASAGLYKGMGNDQVTELHEIDHGFGVPKMSGSKIYVEDLDEMSNKNDLYDRERRALPSHWIGKTAGSSQINSSMHSRGPGPHTNFSTKPSYPVLASKTSNIHYLSDLSIRNEKFISSSKGLYKDDVFLHENAPATRTLPQYPGKSSGIPRLAGLDGGNFSGSGEHRQENDETPIYQEALQNLYQPKQEDDLPDGILTVSLLKHQKIALAWMIQKERSVHCAGGILADDQGLGKTISMIALILKQKNLQSKFTSDLSSSAKPEALNLDDDDGNNEHDAKDIGKDDHQKKQMTNSSENRRPAAGTLVVCPASVLKQWARELEEKVSSCMELSVLVYHGGSRTKYPQELAKHDVVLTTYSIVSNEVPRQHAVDDDDENDHRNTEKYGLSSEFSAGQKRKQTSNAGRKGKKKGKGLKDSQLDFGSGTLARVRWFRVILDEAQTIKNHRTQVARACSGLRAKRRWCLSGTPMQNAVDDLYSYFRFLKYEPYAVYSSFCNSIKHLISRDASQGYKKLQAVLKTVMLRRTKGTQINGVPIIKLPPKSINLKDVDFSLEERAFYLKLEADSRQQFKAYAAAGTVKQNYANILLMLLRLRQACDHPVLVRGYYSEAVVRDSLEMARQLPNEMLLRLLYQLESSSNICPVCSDTPEDPVVTMCGHVFCYQCVSDRLTGDDNVCPAIGCKEVVGTDLVFSQSTLKACICEETVSNAASSSTTHCEDSSIVHSSFVSSKIRAAVDILSSLPSESYRIHPTQESNVDSSTDEPMKAIVFSQWTGMLDLVEISLNQALIQYRRLDGTMSLNARDRAVREFNTDSEVTVMLMSLKAGNLGLNMAAACHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVSRLTIKDTVEDRILALQEEKRKMVSSAFGEDYAGKSHAARLTVEELKYIFKID

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	26.730
SRP064423	SRR2545915	Juvenile tuber	29.210
SRP108465	SRR5643513	five period of Gastrodia elata	10.960
	SRR5643514	five period of Gastrodia elata	11.200
	SRR5643515	five period of Gastrodia elata	10.850
	SRR5643524	five period of Gastrodia elata	10.210
	SRR5643525	five period of Gastrodia elata	11.440
	SRR5643528	five period of Gastrodia elata	10.720
	SRR5643658	five period of Gastrodia elata	13.960
	SRR5643659	five period of Gastrodia elata	12.980
	SRR5643660	five period of Gastrodia elata	13.110
	SRR5643661	five period of Gastrodia elata	10.740
	SRR5643662	five period of Gastrodia elata	13.340
	SRR5643663	five period of Gastrodia elata	12.450
	SRR5643664	five period of Gastrodia elata	14.470
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.970
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.310
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.980
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.730
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	16.110
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	20.580
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	19.070
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.360
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	13.270
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.750
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.950
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.950
SRP279888	Gastro	Gastrodia elata tuber	13.19
	Juven	Juvenile tuber	20.63
	Mother_Gastro	Mother tuber of Gastrodia elata	18.10
	Mother_Juven	Mother tuber of Juvenile	18.24