Gene detail

Detail information of GWHGAAEX005212/evm.TU.scaffold_16.182

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0160	Myosin class V heavy chain
nr	gi\|743826434\|ref\|XP_010933291.1\|	PREDICTED: myosin-1-like [Elaeis guineensis]
Swissprot	tr\|Q9LHE9\|MYO1_ARATH	Myosin-1
trEMBL	tr\|B9H5P2\|B9H5P2_POPTR	Myosin-related family protein {ECO:0000313\|EMBL:EEE94148.1}
TAIR	AT3G19960	myosin 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000024	5656712	5705154	-

Transcript Sequence
>GWHTAAEX005212 TCGAACGATTCAAAAAAAAAAAAAATTGAAATACTGCTGAATCTATAAAAGAGCGGCAGGTGGCGGCAATAGTGGAAGAGCGAAGTCCGTTTGCCTCTTCTGATCAGACCCTCTTCCTCTCTTTTCCTTTCAGCCTCACCTCTGCGACTTCTAGGGTTTTTGATTTGATTTTTCCACTAACACTGGCGTAATTTATTTGAATTGATAATTTTTTTGTTCTGGCGATTCGAAACACTTTTATTTGCTGCTTTGATTTTTACATGGAACTTTGTTTTGCCCATTTAATGAACACTTTTGAATTGTTTTGTGCTGGAGGATATTTGATTGCAGAGATCGTGGCTAGATTTGTTGTTTTTTAGTACTGCTTGTTTTGACTTTTACTCTTTGCTTGTTTTTTTATGACTTCTTAGAATTCTTTTGGAAGATTTGACAGTTGTAGTGCTCTGATCTGGGTGGTTCAGGGGTTTGCTACTATACCATAGTTTTTAATCGTTTTGAGTGAATTGAGGAGTGAAATCCGATTACTTCAATGGAAATGTCTGTTTCCGGAACAAACTCACGGAAGAAGACCGTGGCGGAGAAATCTGCCTCGATCGCGAAGAGGAAGGCAACGCCTGAAAAATCAGTAGGCTTCACGAAGAAGAAGACCATTCTTCCGAGGCCCTTTGGGCAGCATAAGAAAGGGCCGTCGGTTGACAGGGTCAATACGAAGCCTCGAGCTGGCCCTGCGTTCCAATCTGTGCGATCTTTGCCTAGAGATTTCAGATTCACAGATGGATCTCTGTCAGATGAGAGGGCGAAAACTGCAAATCTTGCTACGGTTGCCGAAGTCGAAGAAGATGCTAATGTCGAAGATAATGCATTAACGGGCAATATTCCATCGTATTTGGAAGAGGAGGGTGCTAATGTGCGCACTTCGTCGGAGGAGGATGTGGATTTCATTATTAGAGAGAGGGATGAATCTCCGTATTGTTCCATTTCTATATGTTTGGACGAGACTACTTCTGGAGCTGTTGACAGTTTGCCAGTACCATCCCCTACTTATTTTCCTGAAAGTTTCTTGTCACGGATTGATTTCAACTGGAGTGATACCAGATCATTCGGTCTGAAGAAGGAGATTCATGCATGGTGTCAACTTCCAAGTGGTGAATGGAAATTAGGGAGGATACTGTCAGCTTCAGGGTTAGAGTCAGTTGTTTCTTTTCCCCAGGGAAAATTGTTAAAGTTGACAACAGAAAGCATTTTACCTGCAAACCCTGAAATACTTGATGGGGTTGATGATCTGATGCAACTTAGTTATTTAAATGAGCCATCAGTGCTTTACAATTTACAATACAGATATGATCGGGACACAATATATACCAGAGCAGGGCCAGTACTCATTGCTATCAACCCATTTAAGGAGGTTCAGTTATATGGGAATGATTTTATCGAGGCATATAGATGCAAATCATTAGATAGTCCTCACGTTTATGCTATAGCAGATACTGCTATACATGAAATGATAAGAGATGAAGTAAATCAGTCTATTATTATAAGTGGCGAGAGTGGTGCTGGGAAAACTGAAACAGCAAAGATTGCAATGCAATATCTGACTGCACTTGGAGGAGGTACTGGTATGGAATATGAAATTTTGCAAACAAACCCAATTCTTGAGGCCTTTGGGAATTCAAAAACTGCAAGAAATGATAACTCTAGTCGTTTTGGTAAATTAATTGAAATACATTTTAGTCCAAGTGGAAAGATTTATGGCGCCAAGATTCAGACATTTTTACTTGAGAAGTCACGAGTTGTCCAGTGTGCCAATGGTGAAAGGTCTTATCATATTTTTTATCAACTTTGTGCCGGTGCTTCAAAATTTCTTAAAGCAAAGATTAATTTGAAAAGTGTTGAAGACTACAAGTATCTGAAACAAAGTGGCTGTTTTGTTATTAATGGGGTCAACGAAGCTGAAAGGTTCCATTCTGTTATGGCAGCTATGAAAGTTGTCCACATCAACCAACAAGACCAAGATAATGTCTATGCGATGCTTTCAGCCATTCTATGGTTAGGCAATGTTTCCTTTGCTGTCATCGACAACGAGAACCACGTTGAAGTTGTTGAAGATGACGCTGTGCAAACTGTATCCAAATTGCTTGGATGTGATGCTCAGGCTTTGAAGTTGGTTCTATCCACTCGCAAAATGATAGTTCGAAATGATACTATTATTCAAAAGCTTACATTATCCCAGGCTGTTGATACAAGAGATGCATTAGCAAAATCGCTGTATTCTAGTTTGTTTGAATGGCTAGTAGAACAGATTAATATGTCTCTTGATGTAGGAAAACGGCGAACTGGAAGATCAATTAGCATTCTCGATATATATGGTTTTGAGTCTTTTGAAAGAAATAGTTTTGAACAGTTTTGCATAAATTATGCTAATGAGAGATTGCAGCAACATTTTAATCGTCATTTATTCAAGCTAGAACAGGAGGAATACATCCAAGATGGCATAGATTGGGCAAAGGTTGAATTTGGGGACAATCAGGATTGTTTGAATCTTTTTGAGAAGAAACCATTAGGCCTATTATCTCTTTTGGACGAGGAGTCTACTTTTCCCAATGGCACAGATCTGACTTTCGCAAACAAGCTTAAGCAGCATCTCCATTCAAACCCTTGCTTTAAGGGAGAAAGAGACAAAGTTTTCGCTGTCAACCATTACGCAGGGGAGGTAGCATACGACACTACCAGTTTTCTTGAAAAGAATAGGGACCTGCTGCACGCTGACTCCATTCAACTCCTTGCATCATGTTCATGCCACCTCCCTCGAGCATTTGCTTCTAAGATGCTCTCCCAATCCCATGCACATGAAGGCAGCCAGCACCGATCCAGTGTCGCGACTAAGTTCAAGGGCCAACTTTTCCAACTAATGCAAAGGCTCGGGAACACCACACCTCACTTCATACGCTGTATCAAGCCAAACGCGCTGCAGCTTCCTTCAACGTATGAACAAGGCCTTGTGCTGCAGCAGCTGAAGTGCTGTGGAGTTCTTGAAGTTGTTCGCATTTCCAGGTCGGGTTATCCCACGAGGATGTCTCACCAAAAATTTGCCAGAAGGTATGGCTTCCTTCTTGAAAGCGTTACTTCTAGAGATCCGCTCAGTATTTCGGTTGCAATTCTTCATCAATTTAATATTCTTCCCGAGATGTATCAAGTTGGCTACACCAAATTGTTCTTCCGCACAGGACAGATTGGGGCACTCGAGGACACCAGAAATCGAACCCTTCATGGTATTTTAAGAGTTCAGAGTTGTTTCAGAGGCTATCGAGCTCGTCGTCATGTGAAGGAACGCATGAGAGGAATTCTCCTGCTGCAATCATTTATTCGAGGCGAGCAGACGAGGCGGATATATTCAGAGCTGGCGCGGGAATACAGAGCCGCCGTCGTTCTGCAGAAACACGTAAAACGCCGAATCAGCATGAAACGATATCTGGCCACTCTCAATGCCTCCGTCATTGTGCAGTCTGCTATTCGCTGTCTGCTTGCAAAAAGGTGCTCCTTAGAAGATGGTCTATCTTATGCTTCGGCGGTGCCTTTTGATGGAAAGAAGGATGCGGAGGGTGGGCAGGTGGTGATCAATGCGTCGGTGCTAGCGGAGCTGCAGAGGAGGATCCTGAAGGCGGAGGCGAACCTGAGGGAGAAGGAGGAGGAGAACGGGGTGCTTCAGCATCGTGTGCGACAGTACGAGAACCGTTGGTCGGAGTACGAGCAGAAGATGAAATCCATGGAGGAGGTGTGGCAGAGGCAGATGAGATCCCTGCAGTCGTCCCTCTCCTCCGCGAAGCAAAACCTGGCTGGAAGCGACGGCGAGCTGGGGTCGGATTCGTCGGCTGGCCGCCAGAGGGACGAATGCAATGGGATTGAAAGCCTGGACGTGATCGGGAGGCTGGCCGAGGAGTTCGAGCGGCGGTCGCAGGTTTTTGCCGACAATGCGAAGTTCCTGGTGGAGGTGAAGTCGGGGCAGGCGCGGGCGGGACTTGATCCCGACAAGGAGCTGAAGAATCTGAAGGCGTCGTTTGAGGCCTGGAGGAAGGACTACAGCATCCGGCTGAAGGAAACGAAGGCCATCGTCGACAAGCTGTCCGTCGACGAGCCGCCAGGCACCCCCAGTAAGAAGAGGTGGTGGGGCAGGTTGAACAGCTCCAGGTTATTGTAAATTTATTTATTTATTTATTTTTAATTTTTTATTTGATGATGATGATGATTATGGCTTAATGTATGGATTGTGAGCAGTGTGTGAGTCTTTTTTGTTGTGATCTCATTGTTATCATAGTTTTATGTTTTTTTATAGGTGATAAATTGATCACATGTATGATTTATGAGAGGGCTGTGGGCTGAATAGCTAGCTGAAAATGAGTACATGTTTACAGTTCTTTTCTTATGTTTTTGATGCACAACTCTTAATTAAAATCAGC

Network for GWHGAAEX005212

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00063.20	Myosin_head	249	897	7.10E-237
PF00612.26	IQ	915	932	0.015

Protein Sequence

>GWHPAAEX005212
MEMSVSGTNSRKKTVAEKSASIAKRKATPEKSVGFTKKKTILPRPFGQHKKGPSVDRVNTKPRAGPAFQSVRSLPRDFRFTDGSLSDERAKTANLATVAEVEEDANVEDNALTGNIPSYLEEEGANVRTSSEEDVDFIIRERDESPYCSISICLDETTSGAVDSLPVPSPTYFPESFLSRIDFNWSDTRSFGLKKEIHAWCQLPSGEWKLGRILSASGLESVVSFPQGKLLKLTTESILPANPEILDGVDDLMQLSYLNEPSVLYNLQYRYDRDTIYTRAGPVLIAINPFKEVQLYGNDFIEAYRCKSLDSPHVYAIADTAIHEMIRDEVNQSIIISGESGAGKTETAKIAMQYLTALGGGTGMEYEILQTNPILEAFGNSKTARNDNSSRFGKLIEIHFSPSGKIYGAKIQTFLLEKSRVVQCANGERSYHIFYQLCAGASKFLKAKINLKSVEDYKYLKQSGCFVINGVNEAERFHSVMAAMKVVHINQQDQDNVYAMLSAILWLGNVSFAVIDNENHVEVVEDDAVQTVSKLLGCDAQALKLVLSTRKMIVRNDTIIQKLTLSQAVDTRDALAKSLYSSLFEWLVEQINMSLDVGKRRTGRSISILDIYGFESFERNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVEFGDNQDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLHSNPCFKGERDKVFAVNHYAGEVAYDTTSFLEKNRDLLHADSIQLLASCSCHLPRAFASKMLSQSHAHEGSQHRSSVATKFKGQLFQLMQRLGNTTPHFIRCIKPNALQLPSTYEQGLVLQQLKCCGVLEVVRISRSGYPTRMSHQKFARRYGFLLESVTSRDPLSISVAILHQFNILPEMYQVGYTKLFFRTGQIGALEDTRNRTLHGILRVQSCFRGYRARRHVKERMRGILLLQSFIRGEQTRRIYSELAREYRAAVVLQKHVKRRISMKRYLATLNASVIVQSAIRCLLAKRCSLEDGLSYASAVPFDGKKDAEGGQVVINASVLAELQRRILKAEANLREKEEENGVLQHRVRQYENRWSEYEQKMKSMEEVWQRQMRSLQSSLSSAKQNLAGSDGELGSDSSAGRQRDECNGIESLDVIGRLAEEFERRSQVFADNAKFLVEVKSGQARAGLDPDKELKNLKASFEAWRKDYSIRLKETKAIVDKLSVDEPPGTPSKKRWWGRLNSSRLL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding
GO:0051015	Molecular Function	actin filament binding
GO:0003774	Molecular Function	motor activity
GO:0005515	Molecular Function	protein binding
GO:0016459	Cellular Component	myosin complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	67.460
SRP064423	SRR2545915	Juvenile tuber	40.670
SRP108465	SRR5643513	five period of Gastrodia elata	46.510
	SRR5643514	five period of Gastrodia elata	42.370
	SRR5643515	five period of Gastrodia elata	41.040
	SRR5643524	five period of Gastrodia elata	43.620
	SRR5643525	five period of Gastrodia elata	72.470
	SRR5643528	five period of Gastrodia elata	47.580
	SRR5643658	five period of Gastrodia elata	81.950
	SRR5643659	five period of Gastrodia elata	39.600
	SRR5643660	five period of Gastrodia elata	45.300
	SRR5643661	five period of Gastrodia elata	33.930
	SRR5643662	five period of Gastrodia elata	34.900
	SRR5643663	five period of Gastrodia elata	41.500
	SRR5643664	five period of Gastrodia elata	46.710
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	52.770
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	45.140
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	51.720
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	61.510
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	77.820
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	79.080
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	55.160
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	65.290
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	45.570
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	54.150
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	52.880
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	52.880
SRP279888	Gastro	Gastrodia elata tuber	54.34
	Juven	Juvenile tuber	58.24
	Mother_Gastro	Mother tuber of Gastrodia elata	80.50
	Mother_Juven	Mother tuber of Juvenile	72.44