Gene detail

Detail information of GWHGAAEX005213/evm.TU.scaffold_16.185

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672129823\|ref\|XP_008788428.1\|	2.05E-68	PREDICTED: uncharacterized protein LOC103706171 [Phoenix dactylifera]
trEMBL	tr\|I1Q3U1\|I1Q3U1_ORYGL	2.00E-54	Uncharacterized protein {ECO:0000313\|EnsemblPlants:ORGLA06G0180400.1}
TAIR	AT4G24200	4.00E-29	Transcription elongation factor (TFIIS) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000024	5816024	5835396	+

Transcript Sequence
>GWHTAAEX005213 CGGACGGAAGCGTGGACGATAGAAACGGGCGCGGCCATGCGAAACATGGCTAAGAAGAAAGAAGGGTGAGAGGGTCGCCAAGAAAGGGCTTGAGCCAAAGCGCGAAGGCGATCTTGAGAACATAGCAAGGGGCTTTTCTCTGGAGACATCTAGGGTTTTCTCTCTTTCTGCAAGGAATGATCTTGTAAAGCGATGGGGTTATATTTGAGTTAAGTATGAAGTAGTTATTTATGATCAAGGAAACTGAATGGACTGAGCTCAAAATTATCCTCATTCAAGATATGTTCTGTTGTCTTCAGGAAACACTACATCTCTTTTATTATTTATTTCTTGTTTTGGGGATAGCGTAACCTATTGGCATGGTATATCTCTATACTGTAAGCCTAGCATAGTTCAAGATTTTCAGTCTTGCGTGCTTATCAGTATGACACTGGAGGATTTCTTTACTCTTTCTGAAATGAAGATTGGCCTTACAACTTTAGCAAGAGTTGAAGAATTAATAGGTGTGATGCAAAGGCTGGCGACTTGCGCACCTACAAATGCTTGCGATGCAGCAAGACAGTGGTCAACTGTTGTCCGCACTTTGTCTCTTACAGAAGATCAGAATTGTCTTATTCATTTTGTATTTTTAAACGGGCTTTGCTTTCTCAGCCAGTGGTTGCAGGAAGCTGTGAACTTTAGCCAAGATTCCACAGATGCTGTGGAATTGATAAATATATTGTTGGGTTTTCTTGAGAAACTCCCTGCGGATTGGAACAAGCTGAATGGCTCTGGAATTTTATTAACTGTTAAGAAACTATGTGGTCATACAACTGCTGACGTTAAGGCAAAGGCACAGACTTTGTTTGAGAGGTGGAATTCTGAAAGGGTTGATAATGATGGTCGTGAAGACTTGGAGAAAGGCTGTTTGGGTCTTGCTGGGAGCCTCAGGTCTTCTACTGATTCCACAAAGGATAATACTAAGCACGGTGATGATCAAAAAGCAGTGGAGGAAGGGAGCTGCAGGATGGAATCTTGTATTCCAGCAACAAGTTCCAAAAGCCGTCAGTCTGATACTGCCAATGAGAATTTGAAAGTATCCTTGTTATGTCAGACTATACCGAATAGTTCTATCAGCGAACTTCTGCATAAGTGCTCATTACTTACTACCACAACAGCTTTGGATGTAAGTTCATGCGAAAGAAATTTGCCTGTTCAAGAGTCTTCTGTCGCTCCAGCAAGATTTGCTGTCCCTTCCGGCACGCCTACTTCTCCAAAGGTTCTGCTGAAAGATGATGACAAGTGCATTGCTTCGGTTGCTATGAATATATCAAATCCTGTGGAAACCAATCCTAACAGTGTTAGTATTGTTCAAGGTAATGAACTTGGAAATTCAAAGGCTAACGATATCCGACTGATAAATGAAGCCCCGGATATTGCCAGTGAAGACGACCGACTTTTGAATGATTCCACTCTGAAGGAATGCGAGCAAGTAGAAGAAGAACTGTGCTCTGGATATTCTTCTGAAAAATCAAAGCTTAAGATAAACAAAAAATCGAACGAGAAATCTGATACAGACCACGAATCTGTAGATTTAGATGCATTGGAACTTGCTCGGCAAGTTGCAATTGAAGTTGAAAGAGAGGTAGTTGATTACAGAGAGAAATCCTGCAGCTCTTCCAATGAAACAACCAATGGAGATAAACAGAATCACTTGATTACTGGGGGGGAACCAATTGGAAATGAATCTATGAGACGTAATAATGACTCCAATACTGCTTCCTCTCATGAAACTGTCAATCGCGAGTTTTCTGAATTAACCGATGATCTTAGGAAAGTAACCGGCATGGATCGCAATGTTATGCTGCGCTTCGATTTGAATGAGGACCCCTTTTCTGAAATTTTTGATTGTGCGATGAATTCTATCACAAAGGGGCCAATCGATGCATCCGCACCTATCGCTCCAGCACACTTTGAAGGTGAACTGGGTTGGACTGATTCAGACTCTAAACCAAAAAAAAATCAGATGGAAATAGACTTAAATGTCGCAGAATGTGGAAGTGATGCGGCATTGGAAGCTGCCGCGCCCAAGGAATTACTTGTTTCTTATTGCGTCCCTTCAAGGGACTCCTCTATAGAAGTCAGTTCGGGAAGGCCGGCGAGGATACAGCTGGATCTTAACTGTGTTGCGGATGACGAAGCACCATCTTTACAGTCATCTCTTATGACCAATTATCGCCGGAGGCGCAGTAGAAGCCCATCTCCCATATCTTCATCTTCCTCGAAGAAGCGTTCAATGAAAAGCTTCGACTTGAATGACAGCCTCTTTGTTCTTGACGGCGTCGGCTTCCAGAGCGTGAACACGTCGAATTCCACCAATGCCTTTGGAGCCGGAGGTAATGATCGGGTTTTCACCATCATGGGATCAAAAATAGTTGTGGGAGGGAGGGACCGAATCGATCAGAATCATCGGCCCTACAATGCATCAGGATTGAATTGGGGTGCTGTCTCCGCCGGCGGATCTCTGATGCCTTGCATGCATCAGGTTCCACCGCCCAGTTTTCGCTGTAATGGACTGGAAATGGCGCCAGCGCCGATTTTTTCATTCCAGCCAGCTCATTATGAGCATCCACATTCGACTCTACCTCTGCTGATGAGCATGACAAGCACCCCTTCGAGTTTGAACGGCGTGGAGCCATCAAATCCGGGCCAAGTCATGAATTCCGGAAGCCGGGATCAATTTTTCGTGCCGGCGAACGGCGTTCCGTTTGATGAGCAGATGAAAGCTTCCACCCAGCACTCGACTTCCAGGATTCAGTCGTCGATCAGGAGGGAGCTCAGCTCTGGTTGGGATTCATGGCCTTGATCTCTTTGTATTTATTCTTTTGGCGCTCTTCTATACCTTTTTGAAATTTGATTTCCAAGGCTTATTAGGAGGCTCCTTGGTAATTTTGAAGTTCACATTTTTTCTTGTTACTATTTTTTTTGTTACATGAACTGGCCTGGCTGGCCCTCTTAAAGTTTTATATATATATATTTATATATATAT

Network for GWHGAAEX005213

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08711.10	Med26	99	145	6.60E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	IWS1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	19.070
SRP064423	SRR2545915	Juvenile tuber	17.370
SRP108465	SRR5643513	five period of Gastrodia elata	9.230
	SRR5643514	five period of Gastrodia elata	9.390
	SRR5643515	five period of Gastrodia elata	12.550
	SRR5643524	five period of Gastrodia elata	8.640
	SRR5643525	five period of Gastrodia elata	10.530
	SRR5643528	five period of Gastrodia elata	12.800
	SRR5643658	five period of Gastrodia elata	10.580
	SRR5643659	five period of Gastrodia elata	12.480
	SRR5643660	five period of Gastrodia elata	11.400
	SRR5643661	five period of Gastrodia elata	10.860
	SRR5643662	five period of Gastrodia elata	11.160
	SRR5643663	five period of Gastrodia elata	12.580
	SRR5643664	five period of Gastrodia elata	12.170
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.180
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.760
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.730
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.250
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.540
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.350
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.970
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.620
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.950
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.490
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.770
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.770
SRP279888	Gastro	Gastrodia elata tuber	13.96
	Juven	Juvenile tuber	9.11
	Mother_Gastro	Mother tuber of Gastrodia elata	21.34
	Mother_Juven	Mother tuber of Juvenile	22.40