Detail information of GWHGAAEX005215/evm.TU.scaffold_16.187
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|310818411|ref|YP_003950769.1| | 4.00E-35 | cation transporter/universal stress family protein [Stigmatella aurantiaca DW4/3-1] |
| KOG | KOG1650 | 5.00E-92 | Predicted K+/H+-antiporter |
| nr | gi|731393891|ref|XP_010651630.1| | 7.16E-153 | PREDICTED: cation/H(+) antiporter 1 [Vitis vinifera] |
| Swissprot | tr|Q9SIT5|CHX15_ARATH | 1.00E-92 | Cation/H(+) antiporter 15 |
| trEMBL | tr|D7T1M0|D7T1M0_VITVI | 3.00E-153 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI24400.3} |
| TAIR | AT2G13620 | 5.00E-92 | cation/hydrogen exchanger 15 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000024 | 5839976 | 5842800 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005215
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00999.20 | Na_H_Exchanger | 47 | 440 | 2.30E-44 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0006812 | Biological Process | cation transport |
| GO:0015299 | Molecular Function | solute:proton antiporter activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.580 |
| SRR2545915 | Juvenile tuber | 0.530 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.530 |
| SRR5643514 | five period of Gastrodia elata | 2.590 | |
| SRR5643515 | five period of Gastrodia elata | 1.960 | |
| SRR5643524 | five period of Gastrodia elata | 2.370 | |
| SRR5643525 | five period of Gastrodia elata | 3.710 | |
| SRR5643528 | five period of Gastrodia elata | 1.330 | |
| SRR5643658 | five period of Gastrodia elata | 1.160 | |
| SRR5643659 | five period of Gastrodia elata | 6.770 | |
| SRR5643660 | five period of Gastrodia elata | 6.280 | |
| SRR5643661 | five period of Gastrodia elata | 6.030 | |
| SRR5643662 | five period of Gastrodia elata | 7.780 | |
| SRR5643663 | five period of Gastrodia elata | 8.350 | |
| SRR5643664 | five period of Gastrodia elata | 10.210 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.420 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.290 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.320 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.640 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.600 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.690 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.250 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.630 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.130 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.130 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.38 |
| Juven | Juvenile tuber | 13.62 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.03 | |
| Mother_Juven | Mother tuber of Juvenile | 6.98 |