Detail information of GWHGAAEX005216/evm.TU.scaffold_16.188


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|695011273|ref|XP_009392347.1|0PREDICTED: rop guanine nucleotide exchange factor 1-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q93ZY2|ROGF1_ARATH0Rop guanine nucleotide exchange factor 1
trEMBLtr|M0SEN2|M0SEN2_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P14650_001}
TAIRAT4G384300rho guanyl-nucleotide exchange factor 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002458625575866131+
Transcript Sequence

Network for GWHGAAEX005216

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03759.12PRONE934664.60E-173
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0005089Molecular FunctionRho guanyl-nucleotide exchange factor activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms7.580
SRR2545915Juvenile tuber9.670
SRP108465SRR5643513five period of Gastrodia elata11.690
SRR5643514five period of Gastrodia elata8.020
SRR5643515five period of Gastrodia elata7.700
SRR5643524five period of Gastrodia elata8.330
SRR5643525five period of Gastrodia elata7.100
SRR5643528five period of Gastrodia elata3.530
SRR5643658five period of Gastrodia elata3.320
SRR5643659five period of Gastrodia elata14.730
SRR5643660five period of Gastrodia elata12.490
SRR5643661five period of Gastrodia elata15.880
SRR5643662five period of Gastrodia elata12.180
SRR5643663five period of Gastrodia elata13.250
SRR5643664five period of Gastrodia elata13.740
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_113.240
SRR6049655Rhizomagastrodiae_C368-T10_good_19.030
SRR6049656Rhizomagastrodiae_C368-T07_good_113.380
SRR6049657Rhizomagastrodiae_C368-T07_good_110.570
SRR6049658Rhizomagastrodiae_C368-T04_good_18.240
SRR6049659Rhizomagastrodiae_C368-T04_good_16.160
SRR6049660Rhizomagastrodiae_C368-T01_good_19.780
SRR6049661Rhizomagastrodiae_C368-T04_good_111.390
SRR6049662Rhizomagastrodiae_C368-T01_good_113.250
SRR6049663Rhizomagastrodiae_C368-T01_good_18.660
SRR6049664Rhizomagastrodiae_C368-T10_good_113.820
SRR6049665Rhizomagastrodiae_C368-T10_good_113.820
SRP279888GastroGastrodia elata tuber 14.78
JuvenJuvenile tuber19.63
Mother_GastroMother tuber of Gastrodia elata 4.81
Mother_JuvenMother tuber of Juvenile 9.64