Detail information of GWHGAAEX005218/evm.TU.scaffold_16.190


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|313675259|ref|YP_004053255.1|9.00E-24mate efflux family protein [Marivirga tractuosa DSM 4126]
KOGKOG13470Uncharacterized membrane protein, predicted efflux pump
nrgi|695016916|ref|XP_009395378.1|0PREDICTED: protein TRANSPARENT TESTA 12-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q9LYT3|TT12_ARATH6.00E-128Protein TRANSPARENT TESTA 12
trEMBLtr|M0SL73|M0SL73_MUSAM0MATE efflux family protein {ECO:0000256|RuleBase:RU004914}
TAIRAT1G475300MATE efflux family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002459516055963089+
Transcript Sequence

Network for GWHGAAEX005218

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01554.17MatE602209.40E-34
PF01554.17MatE2814411.20E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055085Biological Processtransmembrane transport
GO:0042910Molecular Functionxenobiotic transporter activity
GO:0015297Molecular Functionantiporter activity
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms5.300
SRR2545915Juvenile tuber8.190
SRP108465SRR5643513five period of Gastrodia elata26.130
SRR5643514five period of Gastrodia elata16.940
SRR5643515five period of Gastrodia elata26.770
SRR5643524five period of Gastrodia elata21.450
SRR5643525five period of Gastrodia elata28.020
SRR5643528five period of Gastrodia elata26.350
SRR5643658five period of Gastrodia elata28.740
SRR5643659five period of Gastrodia elata29.950
SRR5643660five period of Gastrodia elata35.940
SRR5643661five period of Gastrodia elata36.960
SRR5643662five period of Gastrodia elata21.490
SRR5643663five period of Gastrodia elata21.220
SRR5643664five period of Gastrodia elata12.430
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_118.750
SRR6049655Rhizomagastrodiae_C368-T10_good_120.180
SRR6049656Rhizomagastrodiae_C368-T07_good_119.200
SRR6049657Rhizomagastrodiae_C368-T07_good_114.510
SRR6049658Rhizomagastrodiae_C368-T04_good_19.580
SRR6049659Rhizomagastrodiae_C368-T04_good_16.730
SRR6049660Rhizomagastrodiae_C368-T01_good_114.610
SRR6049661Rhizomagastrodiae_C368-T04_good_113.450
SRR6049662Rhizomagastrodiae_C368-T01_good_123.200
SRR6049663Rhizomagastrodiae_C368-T01_good_121.240
SRR6049664Rhizomagastrodiae_C368-T10_good_122.120
SRR6049665Rhizomagastrodiae_C368-T10_good_122.120
SRP279888GastroGastrodia elata tuber 16.59
JuvenJuvenile tuber13.24
Mother_GastroMother tuber of Gastrodia elata 25.22
Mother_JuvenMother tuber of Juvenile 15.09