Gene detail

Detail information of GWHGAAEX005219/evm.TU.scaffold_16.191

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|153009862\|ref\|YP_001371077.1\|	1.00E-73	3-hydroxyisobutyryl-CoA hydrolase [Ochrobactrum anthropi ATCC 49188]
KOG	KOG1684	3.00E-149	Enoyl-CoA hydratase
nr	gi\|743827904\|ref\|XP_010933711.1\|	0	PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial [Elaeis guineensis]
Swissprot	tr\|Q8RXN4\|HIBC5_ARATH	0	3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial (Precursor)
trEMBL	tr\|M0STF1\|M0STF1_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P30390_001}
TAIR	AT4G31810	3.00E-149	ATP-dependent caseinolytic (Clp) protease/crotonase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000024	5964032	6011066	-

Transcript Sequence
>GWHTAAEX005219 TATAAACCGAGCAATTAACACTTGCATAGTTGCATCATAAACCCGTTACAGCAATCCCTACGTTGAAGTCAATTTTCAACGAGAGAAGGAACGGTCTCCGATCGCCATTCTCTATCCATTCCCCTCTTCTGCTTCTTCTCCTTATCAAAAAAAGGAGGCAAGACGCGGAATATGACAATCTTTTCGTTGGTCAGACGGTCATTTCGTGTCCCGCGTCTCCTTCCTCACAACCGAACCCTCTCAGTTCATGCTAGCCCGGCTGTTGATAGCGATCTTAAGAGCGAGGTGCTTATCGAAGGGAAAGCTAGCGCTCGCGCAGCGATTCTTAACAGGCCTTTAGCTCTTAATGCGCTCACACCCAATATGGGGCTTCGTTTGAAGAAGCTGTACGAGTCATGGGAAGATAATTCTGACATTGGATTTGTCATAATGAAGGGAAGTGGCAGGGCATTTTGTGCTGGGGGGGATATCGTTGCTCTTTACCATCTGCTTAATGAAGGGAAGGTGGAAGACTGCAAGGATTTTTTCAAAAACACGTATATGTTTATTTACATATTAGGCACCTATCTAAAGCCACATGTGGCCATTTTGAATGGTATTACTATGGGAGGAGGTGCAGGTGTGTCAATTCCTGGAACATTTCGTGTTGCTACAGATAAAACAATATTTGCCACCCCAGAGGTTCACATTGGTTTTCATCCTGATGCCGGGGCTTCTTTTTACCTCTCACACCTGCCTGGACATCTAGGAGAATATTTGGCCTTAACAGGTGAAAGACTCAATGGAATAGACATGCTTGCTATTGGCCTTGCTACTCACTTTACCTTGAGTGATAAACTTAGTTGGATTGATGAACGACTTGCTAAGTTAGTGACGGATGATCCTTCGGTTGTTGATTCTTCTCTAGCACAGTATGGTGATGTTGTCTATCCAGATCAGAAGAGCATAGTTCATAGGATACAGGCAATAGATGATTGTTTTGGACGTGAAACTGTTGAAGAAATAGTTGATGCTTTGGAAAGTGAGGCAGCCAGAGCTAACCAGGACTGGTGCACTGCAGCACTCAAGAAAATAAAAGAAGCATCACCATTGAGTCTAAAAGTTTCCTTAAAATCTGTGCGGGAAGGCAGATTTCAGACTTTGGATGAATGCCTCGTTCGAGAATATCGGATGTCTCTGCACCATATTTCAAAGGTCGTTTCGCACGATTTTTGCGAGGGTGTTAGAGCTAGGATGGTGGACAAGGACATGGCTCCAAAGTGGGACCCGCCGGCACTGCATTGCGTTTCGGACGATATGGTCGACCACCATTTCTCGCCTCTGGGCGAATTCGATGCCGAACTAGAGCTGCCGATCCATTTGAGAGAAGCTTTTGTTTGAACGAGCGACCGGCTTGGGATGCCCATATTAGCTCATTCTGCCTCATGGTTGATTCTGAAATTGTATCAATGACAAAAGTTTTTTTTTTTCTCGCTGGCATTTATCTGATGGCATTGGAGCCTACTTGCGATGAGTTCTCTTTGTTGTTTAAGTATTTTCTTTTGTAAATACATTGTTAACAATTTATATTAATTAAGCTTTTCTATATTTTATAAATCAAGTTACAATTTCTTGACAA

Network for GWHGAAEX005219

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16113.4	ECH_2	48	381	5.40E-115

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05605	HIBCH	Metabolic pathways	map01100
		Carbon metabolism	map01200
		Propanoate metabolism	map00640
		Cysteine and methionine metabolism	map00270
		beta-Alanine metabolism	map00410

Gene Ontology

GO term	Ontology	Name
GO:0003860	Molecular Function	3-hydroxyisobutyryl-CoA hydrolase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.950
SRP064423	SRR2545915	Juvenile tuber	14.020
SRP108465	SRR5643513	five period of Gastrodia elata	23.330
	SRR5643514	five period of Gastrodia elata	21.580
	SRR5643515	five period of Gastrodia elata	23.060
	SRR5643524	five period of Gastrodia elata	21.520
	SRR5643525	five period of Gastrodia elata	18.300
	SRR5643528	five period of Gastrodia elata	18.280
	SRR5643658	five period of Gastrodia elata	11.020
	SRR5643659	five period of Gastrodia elata	16.830
	SRR5643660	five period of Gastrodia elata	13.580
	SRR5643661	five period of Gastrodia elata	19.660
	SRR5643662	five period of Gastrodia elata	22.140
	SRR5643663	five period of Gastrodia elata	15.460
	SRR5643664	five period of Gastrodia elata	11.410
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	20.620
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	22.490
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	28.190
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	17.450
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.040
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.140
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	18.520
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	18.910
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	31.230
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	24.520
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	31.140
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	31.140
SRP279888	Gastro	Gastrodia elata tuber	16.33
	Juven	Juvenile tuber	13.86
	Mother_Gastro	Mother tuber of Gastrodia elata	31.16
	Mother_Juven	Mother tuber of Juvenile	26.00