Gene detail

Detail information of GWHGAAEX005223/evm.TU.scaffold_16.196

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672142437\|ref\|XP_008795073.1\|	0	PREDICTED: uncharacterized protein LOC103710921 [Phoenix dactylifera]
trEMBL	tr\|M0T6W9\|M0T6W9_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P14210_001}
TAIR	AT5G52950	2.00E-100	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000024	6127231	6135605	+

Transcript Sequence
>GWHTAAEX005223 CCGAACTTTTCCCCCAACTTCCTGTTGTTCCGAATCTGAAACTTCCAATAGCTCCGCCATTGCATTGAAAAAATGGATGCCCTAGATCCCTCTCGAATTGAGCGAATTGTGCTTCTCATTGATCTCCATCCCCTCCTAGTCCTAGAAAACGCTAACCCTTACGTTTCCGGCGTCCTGGCAGCCGCTCGCCGGATCCTCTCATTCCCGGCTATCTCCTCTTCTCTGGCCACATTCAAGCTCTTCTTCTCCTCAATGTCTCCCATCCTCTCCACGTCCAAGCTTCGCCTTCTCCTCGGCAAATCGCCCGCCTTCCTCTCCTTCGACAATCCCCTTCAGACCATAGATAGGCTTTTGGGCACGCTCAATTCGCTCTCTTCTATGCAGTGTTTACTCAATTCTGCTGGCCGACCTGTTTGTTCCCGCGCATCTTTTGTTGCTGGATCATTGCTCCAACTCGAGCACGACTATGCATGGGAGCCCCAATTTCAGGATCATAAGGGCACGCTGCAGTGCTTAACGATTCGTTCCAATTTAGTGGTTCTGTTTTCTCCGATCCCTCAATCTCCCAGCTGCTTGTCTGAATATTTGAGCGAAGGGGCTTTGATGAGTTCTGATCGGTTTTCGGGAAAATTTTTTCAAGTTTTTGGGGTGATCAAGCAACGATTTATCTCCAAAGACATCCATATATGCTGGGTCGATGTTTGTTCCGATCGATATGTCCAGGAGGAAAGATTGGGATCCGGTCTTTTCGAAAGGTTTGTGAAGGAATTGGGTTGGCAGTGCTGCAGGGCAGACATCATTGTGTTGGGATCCGCAATTGTACCATTTGGCTTGATATTTCCACGCATAGGCTGTACTGTGGATTTAAAGTCTTTGAGCAGTTTCAGGAAATATCGAGCTGAATTGATTCTGGGCATTCAAGACTCCAACGGGGCAACACTAGAGTGTAAAAGCTGTGATCTTGAAGCTGTTTTTCTAAAAGTGCTTGAAGAAAGATCAAATTTACCTTGGCGTTCTTCAGAAATTAGCAGGAGAGGCAGCTCTAACATTTGCATAAGAGGGATATGTGAAATGAATGCGGTAACTAAGGCCTTTGTAAACTCTCGTGCTTTAGTACTACTTCATGGAAATTCAAGGGAGTCAAAAAAAAAAGCTGTGGCAAGTGCTAGAGAAGAATTCATCGCCAGTAAGGTTCTTAAGTTACTTTGTGATAATCAGGATGAGGTTGATCCAAGCAATCCTATTTGGGAGCTTATCTTAAATTTTCTTTATAGAAAAAACTGCTCAGCTTTGGTTTCTGTTTTGGATAATGATGGGAGCTCATTCAATGGTGTGTTGCAGCCTTTCACTTTGAATTATGCTTTGCTTGGCATCTTTTCTAAAAATTTTGATATTTCTGTGTGTGCCAACAATGGAGCTAACGATACTAAACGAAAGGAAAACAAAACACTAACAAATCTGTTCCATGATTACTCCTGGTGCTCTTTCATAAATACAATGTTTTGCCAGTCCAATGCCTTTCCTTCAGCAGTTCATTTGGAAGAGTTATATTTCAGCTTACCATGCATTGGATCAAAGAAGTTACGGTTTCTAAAATGCTGGATGAAACAAATTACAAAATTAAACATTTCTTTTGATAGGGAAAGAAAAGAATCAGATAATTCTTTGAGTGAAAAGGAAGAAAAATCAAGCTTTCAACAAAAATCAGAGCAGTGTTCTTCTACCAGTGACAATTGTTTGAACCAATCAACATGCGTATCTACTTTATCCTTTGTTAACTTTGAAGACTCAAATGGCTTTTTGGGAAGTATTTCTCAAAAGATTGAGCATGCTTTGTCCACAAAGGAAATTGATTTGTTTGCTTTTGCAGAACGTTTAGTACTTATGTCTATTGATGCATTTTATGCTAAATATAGAAAGGATCTGGCAGAAAGCTTAAATCCAAGCGATGAGATGGATTTGCTCAATTCCAAAATAGCTACTGAAGTCACTAATTTTCTCTTAGTTAGACCTAAGGATCTAGAATTCAAGTGCAAAAGATCTATTTCCTTGTCTTCCGCAACAGAAACAACTCCTGTTGTTTACAGTAATGATGAGAAAATTAGAATGAATGAACTTCAAATCTTATTTAGAATGGAGCTACTATTGTCAAAGGTTGCATCAAACTATGATAAGAGCATGAAACAAAAACTGATAAAAGATTGTTGCTTGCTATTGCAAAACGTTGAATTCTATCTGCTGGTTGATTTTTTGGCTGGAGAAAGTCTTCTCAATTATGCAACAAGAACATTAAAATCCAGATACGAACATTCTCTGCAGGATGTCATTCATGAAATCTTTGCTGAAATGGAATTTTTCTCCTTTAATGGGAATGATGAAAAGGAGTCATCAGATCCACTACCTGCAAGCACCGACAATAGCGGACAGAAAAAGGGCGACAGTTTCAGCAAAAATGAACACACTGTGCCCACCCAACATGCTATTGATAGTGTGATGGAGCAACAGCTGATGGAAGCTCAGGAGAGAAGAAACAGGGCTCGAAGATTCTCTTCATTCACTAGTTGGATACCAGATCTGCAGAGGGTGTGGGCACTTAAGCATTCAACCCCTGAGAGACGTGCGCTTGAGCCTTTGCCCAGAGTTAAATCTAAAAAAAGGAAACGACGATCAATGAGCCATGAACGGGTCTGTGAAACACCATGATGCTATTAGGTCTCTAGTGGTTTAGCTTTTTGCAGAGATTGATGATTGAAGGCTTTCATAAATAGTGAAGCAGATCAATATTTTTTTGTTCATTTGTAAGTTTTAATTGGAATAATGATGTCTAGCCATATAGATGGGAAATGTCATGTGCACAACTCAATTTATTTCTTATTTACATGTATGTATATTACCACTGTACTAAAAAAATGTACATAGT

Network for GWHGAAEX005223

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.130
SRP064423	SRR2545915	Juvenile tuber	0.370
SRP108465	SRR5643513	five period of Gastrodia elata	1.010
	SRR5643514	five period of Gastrodia elata	0.750
	SRR5643515	five period of Gastrodia elata	0.480
	SRR5643524	five period of Gastrodia elata	0.650
	SRR5643525	five period of Gastrodia elata	0.000
	SRR5643528	five period of Gastrodia elata	0.080
	SRR5643658	five period of Gastrodia elata	0.040
	SRR5643659	five period of Gastrodia elata	0.510
	SRR5643660	five period of Gastrodia elata	0.320
	SRR5643661	five period of Gastrodia elata	0.400
	SRR5643662	five period of Gastrodia elata	0.230
	SRR5643663	five period of Gastrodia elata	0.390
	SRR5643664	five period of Gastrodia elata	0.090
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.570
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.950
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.600
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.860
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.410
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.580
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.930
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.320
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.610
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.180
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.660
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.660
SRP279888	Gastro	Gastrodia elata tuber	0.13
	Juven	Juvenile tuber	0.14
	Mother_Gastro	Mother tuber of Gastrodia elata	0.01
	Mother_Juven	Mother tuber of Juvenile	0.01