Detail information of GWHGAAEX005225/evm.TU.scaffold_16.200


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG34442.00E-62Uncharacterized conserved protein
nrgi|225428065|ref|XP_002279626.1|2.03E-88PREDICTED: trafficking protein particle complex subunit 2-like protein [Vitis vinifera]
trEMBLtr|A0A059AP80|A0A059AP80_EUCGR8.00E-88Uncharacterized protein {ECO:0000313|EMBL:KCW55564.1}
TAIRAT2G209302.00E-62SNARE-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002461827566198086+
Transcript Sequence

Network for GWHGAAEX005225

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04628.12Sedlin_N71351.30E-32
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006888Biological ProcessER to Golgi vesicle-mediated transport

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms20.750
SRR2545915Juvenile tuber20.300
SRP108465SRR5643513five period of Gastrodia elata22.730
SRR5643514five period of Gastrodia elata25.180
SRR5643515five period of Gastrodia elata21.270
SRR5643524five period of Gastrodia elata27.110
SRR5643525five period of Gastrodia elata34.520
SRR5643528five period of Gastrodia elata51.210
SRR5643658five period of Gastrodia elata35.590
SRR5643659five period of Gastrodia elata21.070
SRR5643660five period of Gastrodia elata20.740
SRR5643661five period of Gastrodia elata21.420
SRR5643662five period of Gastrodia elata19.760
SRR5643663five period of Gastrodia elata19.950
SRR5643664five period of Gastrodia elata22.110
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.680
SRR6049655Rhizomagastrodiae_C368-T10_good_130.920
SRR6049656Rhizomagastrodiae_C368-T07_good_118.660
SRR6049657Rhizomagastrodiae_C368-T07_good_114.580
SRR6049658Rhizomagastrodiae_C368-T04_good_118.060
SRR6049659Rhizomagastrodiae_C368-T04_good_117.750
SRR6049660Rhizomagastrodiae_C368-T01_good_116.090
SRR6049661Rhizomagastrodiae_C368-T04_good_114.140
SRR6049662Rhizomagastrodiae_C368-T01_good_115.200
SRR6049663Rhizomagastrodiae_C368-T01_good_116.780
SRR6049664Rhizomagastrodiae_C368-T10_good_120.730
SRR6049665Rhizomagastrodiae_C368-T10_good_120.730
SRP279888GastroGastrodia elata tuber 22.57
JuvenJuvenile tuber17.30
Mother_GastroMother tuber of Gastrodia elata 28.12
Mother_JuvenMother tuber of Juvenile 21.35