Detail information of GWHGAAEX005231/evm.TU.scaffold_16.207
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|512551317|ref|YP_008089223.1| | 2.00E-43 | Beta-galactosidase [Chthonomonas calidirosea T49] |
| KOG | KOG0496 | 0 | Beta-galactosidase |
| nr | gi|743855265|ref|XP_010941318.1| | 0 | PREDICTED: beta-galactosidase 11-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q6ZJJ0|BGA11_ORYSJ | 0 | Beta-galactosidase 11 (Precursor) |
| trEMBL | tr|M0U8K8|M0U8K8_MUSAM | 0 | Beta-galactosidase {ECO:0000256|RuleBase:RU000675} |
| TAIR | AT2G16730 | 0 | glycosyl hydrolase family 35 protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000024 | 6432581 | 6437927 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005231
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01301.18 | Glyco_hydro_35 | 31 | 337 | 2.40E-112 |
| PF02140.17 | Gal_Lectin | 743 | 821 | 2.40E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH35 |
| Carbohydrate-Active enzymes Family | GH35 |
| Carbohydrate-Active enzymes Family | GH35 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0030246 | Molecular Function | carbohydrate binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.310 |
| SRR2545915 | Juvenile tuber | 0.110 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.570 |
| SRR5643514 | five period of Gastrodia elata | 0.520 | |
| SRR5643515 | five period of Gastrodia elata | 0.580 | |
| SRR5643524 | five period of Gastrodia elata | 0.390 | |
| SRR5643525 | five period of Gastrodia elata | 0.640 | |
| SRR5643528 | five period of Gastrodia elata | 0.470 | |
| SRR5643658 | five period of Gastrodia elata | 0.360 | |
| SRR5643659 | five period of Gastrodia elata | 1.050 | |
| SRR5643660 | five period of Gastrodia elata | 1.900 | |
| SRR5643661 | five period of Gastrodia elata | 2.040 | |
| SRR5643662 | five period of Gastrodia elata | 1.830 | |
| SRR5643663 | five period of Gastrodia elata | 1.010 | |
| SRR5643664 | five period of Gastrodia elata | 2.710 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.090 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.250 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.160 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.250 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.130 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.070 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.050 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.140 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.100 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.130 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.130 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.58 |
| Juven | Juvenile tuber | 0.51 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.29 | |
| Mother_Juven | Mother tuber of Juvenile | 0.80 |