Gene detail

Detail information of GWHGAAEX005232/evm.TU.scaffold_16.208

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|78486473\|ref\|YP_392398.1\|	4.00E-155	3-dehydroquinate synthase [Thiomicrospira crunogena XCL-2]
KOG	KOG0692	0	Pentafunctional AROM protein
nr	gi\|695044447\|ref\|XP_009409975.1\|	0	PREDICTED: 3-dehydroquinate synthase, chloroplastic [Musa acuminata subsp. malaccensis]
Swissprot	tr\|U3KRF2\|DHQS_ACTCH	0	3-dehydroquinate synthase, chloroplastic (Precursor)
trEMBL	tr\|M0TIG7\|M0TIG7_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P17800_001}
TAIR	AT5G66120	0	3-dehydroquinate synthase, putative

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000024	6473592	6543253	-

Transcript Sequence
>GWHTAAEX005232 AAAAAAAAGGGTTCACCTACCTCACTGAGCCCACCCACGCGCGTAGTCTACCTGCAAAAAGCACATGCGTCAAATATATGAAAATGGTAGCCGTCCGGCGAGAAGCCACCATCTTGTTCGCACGCAAACCTTAGGCCAATCAGAAACACTCATTCATGGCCGCATCCGCATATTCATCCATCTGCTTTCCCCTCCAATACCCTTCGAGGGTCAATTATGGTCTCCGCATGTTTTGTCCCCTCAACGTCATGAACGCTTCCTTTCGACAGCGCCGTCGACTTTCCACCTCCGTCAGTCGTAGTAGCTTCTTCCGTGCTTCGTCTGATAAAATCGTCTCTAGCGTCGCCTCCACATCAGCTCCGGCAATGGACCCGGCAAAGCGGGAGGCTGCGTCTAGGGTCTCTACTGTTGTGGACGTCGATCTAGGCGACCGAAGCTACCCAATTTACATCGGCTCGGGTTTGCTCGATATCCCGGATCTACTCCAGAGGCATGTATGTGGGAAGATGGTGCTTATTGTAACGAATACTACGATTGCTCCTCTGTACCTCGACCTAGTTGCCAAGGCTTTCACGCATGGGAATTCTCATGTCTCTGTGGAGAGCGTGATCCTTCCAGATGGAGAAAAGTATAAAAATATGGAAACGATGATGAAAATATTTGATAAGGCAATAGAATCTAGGATGGACCGCCGTTGTACATTTGTGGCTCTTGGTGGGGGAGTAATTGGTGACGTGTGTGGCTTTGCGGCTGCAACTTACGTTCGTGGTGTCAATTTTATTCAAATTCCCACAACCCTGATGGCTCAGGTGGACTCATCTGTCGGAGGGAAGACTGGAGTAAATCATCCGCTAGCCAAGAACATGATCGGCTCATTCTACCAACCACAATGTGTTCTTATAGATACTGATACTCTAAAGACCTTACCTGATCGAGAACTAGCTTCAGGTATAGCGGAAGTTATCAAGTATGGGCTTATCAGGGATGCCGAGTTCTTTGAATGGCAGGAAAAGAATATGGAGGCGCTTCTGTCAAGGAATCCGAATGCCTTGGCTTATGCTATCAAGCGGTCATGTGAAAACAAAGCTAAAGTTGTCTCCTTAGATGAGAAGGAATGTGGACTGAGGGCTACCCTGAACTTGGGCCATACTTTTGGGCATGCTATAGAAGCGGGATTTGGGTATGGCCAGTGGCTCCATGGAGAGGCTGTCGCTGCTGGCACGGTCATGGCGGTCGACATGTCCCATCGCCTCGGCTGGATCGATAACAGCATCGTCGAGAGGGTCCGCAGCATCCTGCAGTGCGCCAGACTCCCGACCGCACCTCCCAAGATGATGACGGTCGACCTGTTCGAAACTGCTATGGCGGTCGATAAGAAGGTGGCAGATGGTCTTCTAAGGCTCATCCTCCTGAAAGGTCCTCTTGGCAGCTGTGTTTTCACCGGAGATTATGACCGTAATGCCCTACATGAAACTCTCCAAACTTTCTGCAGAAGCTCTTAACTTTATCCCAGTTTTCCTATTACCTTGATTGGTATATATATATGAATAGTGTTGCAATTCAGTGATTTGAGGTTCATGATTTATAATCCCAGATTATGAGTTCAAATCTCACTTAACCATAAAATAAAAAATTAAAAAAAATATACATATATACAAAACTTTATCACCATCTTAATATTGCATGTAATAGACTTCTGAATGTGGAGTGCGATTCATGTTTATTTTGTTTACCCAAATCCCTCTAAGCAACCACTTAAATTG

Network for GWHGAAEX005232

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01761.19	DHQ_synthase	151	409	2.60E-107

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01735	aroB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of antibiotics	map01130
		Biosynthesis of amino acids	map01230
		Tryptophan metabolism	map00380

Gene Ontology

GO term	Ontology	Name
GO:0009073	Biological Process	aromatic amino acid family biosynthetic process
GO:0003856	Molecular Function	3-dehydroquinate synthase activity
GO:0005737	Cellular Component	cytoplasm

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	82.310
SRP064423	SRR2545915	Juvenile tuber	62.400
SRP108465	SRR5643513	five period of Gastrodia elata	52.170
	SRR5643514	five period of Gastrodia elata	37.830
	SRR5643515	five period of Gastrodia elata	64.450
	SRR5643524	five period of Gastrodia elata	53.980
	SRR5643525	five period of Gastrodia elata	98.670
	SRR5643528	five period of Gastrodia elata	133.230
	SRR5643658	five period of Gastrodia elata	86.840
	SRR5643659	five period of Gastrodia elata	42.780
	SRR5643660	five period of Gastrodia elata	37.840
	SRR5643661	five period of Gastrodia elata	51.170
	SRR5643662	five period of Gastrodia elata	61.830
	SRR5643663	five period of Gastrodia elata	52.650
	SRR5643664	five period of Gastrodia elata	43.290
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	44.680
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	32.400
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	41.050
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	44.400
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	43.780
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	50.940
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	51.880
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	51.210
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	72.510
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	65.550
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	46.610
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	46.610
SRP279888	Gastro	Gastrodia elata tuber	53.50
	Juven	Juvenile tuber	49.53
	Mother_Gastro	Mother tuber of Gastrodia elata	108.04
	Mother_Juven	Mother tuber of Juvenile	81.91