Gene detail

Detail information of GWHGAAEX005236/evm.TU.scaffold_16.213

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|83643482\|ref\|YP_431917.1\|	8.00E-07	acyl-CoA-binding protein [Hahella chejuensis KCTC 2396]
KOG	KOG0817	2.00E-30	Acyl-CoA-binding protein
nr	gi\|672130180\|ref\|XP_008788613.1\|	4.16E-64	PREDICTED: acyl-CoA-binding domain-containing protein 3-like [Phoenix dactylifera]
Swissprot	tr\|Q9STX1\|ACBP3_ARATH	5.00E-31	Acyl-CoA-binding domain-containing protein 3 (Precursor)
trEMBL	tr\|M0U7P2\|M0U7P2_MUSAM	4.00E-51	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP09320_001}
TAIR	AT4G24230	2.00E-30	acyl-CoA-binding domain 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000024	6690912	6714735	-

Transcript Sequence
>GWHTAAEX005236 GGGGTACTGTAGAATTATCATTTTATGTCTCCATATCTATGGGCTGAGTGGAAGCGGAAGGCGTAAGGAGCTGTGTGATACAGGCTGTGATGGAGTTTTACCAGGAACTTCTCATTACCGCCGTCTTGTCTGTCCTCATCGCCTTCCTGATCGGCAAGATCGCCGTTCTTGGAGCCAGCGACGGCGATCCTGCAGCGGATGCCACTGTCTCCGCCGACTGTGACGCATCCTTTTCAACTGGGGGGAAATCCGAGGAATCTGCGCTGAAAGAAACTGAAGCCTCAGCTGATCGTTCTGGGACGGAAGAGAAGCATGTCGGCACAGAGCAAGAGGTTTTTGTCGATGCGAGTAAAAATTCTTTGGAAGGAGCGAGCATGTTAAGAGTGGAGGAGGACTTCAGCGCAAAATTGCTAGATACAGTGGATAATTTGTGTAGCAGTGGTGATGCGTTGAAGGAAAAAGAGGAAGTGAAAGTAGAGGGTGTCGAGATTAACACCGAGAGGGAAAGTGAGGGTGACATTACGGAGGGATCGCTGCTTCACGGAGAAGACGAATGGGAAGGGATAGAGAAGAGCGAACTGGAAAAACTTTTTGGTTCAGCTGCCGAGTATGTTTGTGGTTCGAGTAGCGCAGCTGACTTGACCCGACTGAGTAGTGATGTCCGGATGGAACTCTACGGACTTAGCAAGATTGCCACCGAGGGTCCGTGCTATGAATCGCAACCACTGCCATTGAACTTCTCTGCTCGATCAAAATGGCAAGCTTGGCAAAAACTGGGAAACATGACACCTGAGGTAGCTATGGAACATTACGTTAAACTTCTTTCCAAAAATATTCCTGGATGGATGGACAAAAATTCTGGAGCAAGTCTAGTGACTATAAAAACGGATATACAATGTGACAGGAGCAATGATTTTTCTGTGGAAGGTGCAATAGATTCAGGTAGTACTGATTTAAGATTATCCTCTCAGCATCAACCTACCGGACAAAGCACATCAGAAGACGTTGCTCATGTTGAAGTTGATCATGCAATGGAAGAGTTAAAAATCCTAGAGCAAGGGTTTGCAAGCACAATGATCCTCAACTTGTTATCTCCGTCCAGAGGGGCGTTCCTGAGCATTATATACTGGTAATTTGGCTGTGGCCTGCATGAAATAAGTTTGGCACAATTTCCATTTAGTTCTTGAAATATGGATTTTTTACTAGGCCTGCTGCTGTGTGCAATGTTTCATTGTTATGTGTATATATATATACACACAGTTCATTGTAAAATTGCATTAATCCAGTGCAATTTTGTTAATTGTTTACAAATCAAACCCTTTTGCAAAAAGTATTATAATGTGATTTCCAAAATGCTGCATTTGTCCAGACAGTTGAATGTATTATGGTTAAAGCCTATATGTTTTAAAGAGGGTTTTTCAGTAAAATAGACCCCCACCCAGATATTTT

Network for GWHGAAEX005236

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00887.18	ACBP	166	248	3.40E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0000062	Molecular Function	fatty-acyl-CoA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	35.950
SRP064423	SRR2545915	Juvenile tuber	44.840
SRP108465	SRR5643513	five period of Gastrodia elata	54.170
	SRR5643514	five period of Gastrodia elata	65.220
	SRR5643515	five period of Gastrodia elata	59.330
	SRR5643524	five period of Gastrodia elata	64.250
	SRR5643525	five period of Gastrodia elata	102.470
	SRR5643528	five period of Gastrodia elata	76.870
	SRR5643658	five period of Gastrodia elata	105.520
	SRR5643659	five period of Gastrodia elata	44.060
	SRR5643660	five period of Gastrodia elata	41.730
	SRR5643661	five period of Gastrodia elata	50.360
	SRR5643662	five period of Gastrodia elata	41.110
	SRR5643663	five period of Gastrodia elata	40.820
	SRR5643664	five period of Gastrodia elata	42.620
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	62.150
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	46.340
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	57.420
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	61.210
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	68.020
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	77.240
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	61.920
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	62.790
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	56.150
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	66.500
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	62.890
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	62.890
SRP279888	Gastro	Gastrodia elata tuber	42.67
	Juven	Juvenile tuber	88.41
	Mother_Gastro	Mother tuber of Gastrodia elata	52.02
	Mother_Juven	Mother tuber of Juvenile	57.40