Detail information of GWHGAAEX005245/evm.TU.scaffold_16.222


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|197105527|ref|YP_002130904.1|6.00E-24SWIB-domain-containing protein implicated in chromatin remodeling [Phenylobacterium zucineum HLK1]
KOGKOG19467.00E-34RNA polymerase I transcription factor UAF
nrgi|672171215|ref|XP_008805671.1|4.63E-40PREDICTED: upstream activation factor subunit UAF30-like isoform X2 [Phoenix dactylifera]
trEMBLtr|M0TIC1|M0TIC1_MUSAM3.00E-36Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P17340_001}
TAIRAT1G317607.00E-34SWIB/MDM2 domain superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002468114326833140-
Transcript Sequence

Network for GWHGAAEX005245

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02201.17SWIB371106.10E-29
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySWI/SNF-BAF60b

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms50.150
SRR2545915Juvenile tuber69.220
SRP108465SRR5643513five period of Gastrodia elata115.220
SRR5643514five period of Gastrodia elata120.890
SRR5643515five period of Gastrodia elata108.480
SRR5643524five period of Gastrodia elata109.440
SRR5643525five period of Gastrodia elata86.400
SRR5643528five period of Gastrodia elata61.490
SRR5643658five period of Gastrodia elata43.100
SRR5643659five period of Gastrodia elata155.260
SRR5643660five period of Gastrodia elata163.930
SRR5643661five period of Gastrodia elata173.410
SRR5643662five period of Gastrodia elata182.370
SRR5643663five period of Gastrodia elata179.220
SRR5643664five period of Gastrodia elata175.630
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1131.720
SRR6049655Rhizomagastrodiae_C368-T10_good_1170.500
SRR6049656Rhizomagastrodiae_C368-T07_good_1118.090
SRR6049657Rhizomagastrodiae_C368-T07_good_195.580
SRR6049658Rhizomagastrodiae_C368-T04_good_199.730
SRR6049659Rhizomagastrodiae_C368-T04_good_180.850
SRR6049660Rhizomagastrodiae_C368-T01_good_1117.720
SRR6049661Rhizomagastrodiae_C368-T04_good_189.280
SRR6049662Rhizomagastrodiae_C368-T01_good_1134.840
SRR6049663Rhizomagastrodiae_C368-T01_good_1124.020
SRR6049664Rhizomagastrodiae_C368-T10_good_1160.480
SRR6049665Rhizomagastrodiae_C368-T10_good_1160.480
SRP279888GastroGastrodia elata tuber 192.06
JuvenJuvenile tuber135.43
Mother_GastroMother tuber of Gastrodia elata 42.61
Mother_JuvenMother tuber of Juvenile 54.55