Gene detail

Detail information of GWHGAAEX005246/evm.TU.scaffold_16.223

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|521462574\|ref\|YP_008149444.1\|	7.00E-41	hypothetical protein SCE1572_15050 [Sorangium cellulosum So0157-2]
KOG	KOG0061	0	Transporter, ABC superfamily (Breast cancer resistance protein)
nr	gi\|743776493\|ref\|XP_010918656.1\|	0	PREDICTED: ABC transporter G family member 14-like isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q9C6W5\|AB14G_ARATH	0	ABC transporter G family member 14
trEMBL	tr\|A0A0A0L027\|A0A0A0L027_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN53471.1}
TAIR	AT1G31770	0	ATP-binding cassette 14

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000024	6834286	6840215	-

Transcript Sequence
>GWHTAAEX005246 ATGGAAGCGCGCCACAACGCACCGCAGCGAAAGCAAGTGCTGCCGCGCGCCGCAGCGGAAGCAAGCGCTGCGTACACCTCTGTAGCAGTCGTCCTGAGAAGCAGGCGCTACAGCGCGTCGCAACGGCAGGAAAACAGAGACCAGGGAGCTCCAGCGCGTCGAAACGCAGGAAAACAGAGACCAGGGAGTCCAAAATTGACGATGATACTTGATGGAATATGTTGCCTCCCCTATAAATACATATCCAATCCTAACCCATCCTGCCAAAGGCCCAGCCGATCTCTGTGCGTGCGTCAACGCGGACAGATGCCACGTGGCGAGGCCAATTGCGACACCGACGGCAGTCTAACGGTGAGCAGCAGCAGCGGTAACGGCAGCCCCTCAAGCGCCGCCGTCTTCCCGCTGACTCTCAAATTCGAGGACGTGGCGTACAAAGTGCGGTCAAAGGAGAAGGCGGTGCTGAGCGGGGTCAGCGGCGCTGTGGGGCCGGGGGAGATGCTGGCCCTGCTGGGCCCCTCTGGCAGCGGCAAGACAACCCTCCTGACGGCGCTGGGCGGCCGCAGCCCGGACCCGAGGGGCCTATCCGGCCGGATCACTTACAACGGCCGGGGATTCTCGCCGGCCGTCCGCCGCCGGACGGGCTTCGTGGCGCAGGACGACGTGCTGCACCCCCACCTCACCGTTTCCGAGACGCTTCTTTTTACGGCGCTGCTGCGCTTGCCGAGGTCTCTGGGCCGGGCCGAGAAGGCCCAGCAGGCCCAGCGGGTGGAGTCAGAGCTGGGCCTGGCCCGCGTCGGGGATTGCCTTGTGGGCGGGCCGCGGGTCAGGGGGGTCTCTGGCGGGGAGAGGAAGCGGGTCAGCATCGGCCAGGAGATGCTGCTCAACCCCAGCCTGCTGCTGCTGGACGAGCCCACGTCGGGCCTGGACTCCACCACCGCCCTCAGAATTGCCGGCAGCTTGCGCCGCCTGGCCTCCGAGGACGGTCGCACCATCGTCATCAGCATTCACCAGCCATCCAGCAGGTTGTACCACATGTTTGATGGGGTCGTTCTGCTGTCGGAGGGCCGCCCCATATATAACGGGCGGGCCGTCGATGCCCTGCCCTATTTCGACTCCTTGGGATTCCCTGCCGCCGCCACCGTCAACCCCGCCGAGCTGCTTCTCGATCTTGCCAACGGAATATCGCTGGACTTGAATCAGGAGAGCACGAGCAAAGGGAACGGAGTGAGGGAACAGCTCCTATCGGCCTACGACCGCATCATCGCCACCAGGCTGAAGGAGGAGCTCAGCAGCGCGGATAACCGCAGCAAGCAGCAACCCGGAGCCAATGGTTGTGCTCTCTCAGCCCACAGAAAAAGGAGGGGCAGAGAAGAGGGGGAGCAATGGAGCACCACCTGGATGGACCAGTTCGCCGTTCTCCTCCGGCGAAGCCTGAAGGAACGCCGCCACGAAGCATTCGACAAGCTCAAGATCTTCCAAGTCCTCAGCGTCGCCACTCTCGGCGGCCTCCTCTGGTGGCAGACCCCTCCTTCTCACATCCAAGACAAAACGTCCCTGCTCTTCTTTTTCTCAGTGTTCTGGGGATTCTTCCCTCTGTACAACGCGGTGTTCACATTTCCGCAGGAGCGAGCGATGCTGCTGAAGGAGAGGGCGTCCGGCATGTACCGGCTGTCCTCCTACTTCATGGCGCGGACGGCCGGTGATCTTCCCATGGAGCTCGCCCTCCCCACCGCCTTCACCTTCATCATCTACTGGATGGGCGGGCTCGTTCCGCGGCCCGGCCCGTTTCTCCTCTCCCTCTTCATCGTCCTCTACAGCGTTCTGGTGGCGCAGAGCCTGGGCCTGGCCTTCGGAGCTCTGCTCATGGATATAAAGCAGGCCACTACTCTGGCCTCCGTCACCACCCTCACCTTCCTCATCGCAGGGGGATTCTACGTCCAGCACATTCCTCCATTTATTATCTGGCTTAAGTACCTCAGCTACAGCTTCTACTGCTTCAAGCTCCTCGTCGCCGTTCAGTTCCACCCTCGTGAGACGTACGACTGCGGCGAGGCCAGATGCTCTGTCGCCGATTTCCCCGCCATCAAGACCGTCGGATTCAACCTCCTCTGGATGGACGCCGCGATCTTGGCCGTCATGCTCGTCGGATATCGCCTCCTTGCATACTGCGCCCTAAGAACTTTCCAGAGACGCCCCCCGGCCTAGTTCGGCTATCCTCTTCGTCTCCTCCTCCTTCATCACCACCTTATGCTCTCCAACAATGGCATAAAGCTCCTCTCCAGCTCAGCACAGGGCTCCGGCGAAATCGGCCGACCCAGCACAGGGCTCCGGCGAAATCCTTGATCTTCTATTCGTCTTCTCTTCCTCCGTCTTGCGTTTTCTTGTAAAAGATTGAGAAACAATGGATTTATGTAGCTGAAGAGGATAGCTGTTTGTTTTATGCTCTTTAAGAATACTGGCGTTGCATGAATCAAAAGATGTGTGTGATCTATTGATGATGCAGGATCAAGTGTGAGGAGAAATTTTAATTTCCTTTGATCCAAAGTAAAGTGGATACTATTGACCAACAAATTCGCCTTTTTTATGAGTATTTAAATTTGTTGATGTGAT

Network for GWHGAAEX005246

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00005.26	ABC_tran	154	306	2.80E-24
PF01061.23	ABC2_membrane	469	674	3.30E-35

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding
GO:0016887	Molecular Function	ATPase activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	16.160
SRP064423	SRR2545915	Juvenile tuber	5.550
SRP108465	SRR5643513	five period of Gastrodia elata	18.240
	SRR5643514	five period of Gastrodia elata	14.620
	SRR5643515	five period of Gastrodia elata	3.860
	SRR5643524	five period of Gastrodia elata	6.710
	SRR5643525	five period of Gastrodia elata	232.280
	SRR5643528	five period of Gastrodia elata	60.530
	SRR5643658	five period of Gastrodia elata	83.270
	SRR5643659	five period of Gastrodia elata	15.500
	SRR5643660	five period of Gastrodia elata	23.610
	SRR5643661	five period of Gastrodia elata	23.350
	SRR5643662	five period of Gastrodia elata	49.960
	SRR5643663	five period of Gastrodia elata	40.760
	SRR5643664	five period of Gastrodia elata	81.530
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	25.250
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	23.880
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	26.880
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	19.450
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	21.350
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	19.960
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	17.430
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.930
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	24.870
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	31.560
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	37.770
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	37.770
SRP279888	Gastro	Gastrodia elata tuber	11.67
	Juven	Juvenile tuber	22.30
	Mother_Gastro	Mother tuber of Gastrodia elata	1.51
	Mother_Juven	Mother tuber of Juvenile	1.85