Detail information of GWHGAAEX005247/evm.TU.scaffold_16.225


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743776483|ref|XP_010918650.1|1.79E-163PREDICTED: F-box protein SKIP31 isoform X4 [Elaeis guineensis]
Swissprottr|Q9FHK0|SKI31_ARATH3.00E-110F-box protein SKIP31
trEMBLtr|D7TFB9|D7TFB9_VITVI7.00E-144Putative uncharacterized protein {ECO:0000313|EMBL:CBI29192.3}
TAIRAT5G453601.00E-109F-box family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002469949247003617+
Transcript Sequence

Network for GWHGAAEX005247

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12937.6F-box-like691131.20E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms35.230
SRR2545915Juvenile tuber39.180
SRP108465SRR5643513five period of Gastrodia elata33.760
SRR5643514five period of Gastrodia elata35.960
SRR5643515five period of Gastrodia elata30.960
SRR5643524five period of Gastrodia elata31.560
SRR5643525five period of Gastrodia elata36.290
SRR5643528five period of Gastrodia elata30.790
SRR5643658five period of Gastrodia elata38.720
SRR5643659five period of Gastrodia elata30.010
SRR5643660five period of Gastrodia elata27.430
SRR5643661five period of Gastrodia elata23.060
SRR5643662five period of Gastrodia elata31.290
SRR5643663five period of Gastrodia elata31.760
SRR5643664five period of Gastrodia elata31.500
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_139.100
SRR6049655Rhizomagastrodiae_C368-T10_good_179.280
SRR6049656Rhizomagastrodiae_C368-T07_good_140.950
SRR6049657Rhizomagastrodiae_C368-T07_good_141.060
SRR6049658Rhizomagastrodiae_C368-T04_good_142.290
SRR6049659Rhizomagastrodiae_C368-T04_good_149.110
SRR6049660Rhizomagastrodiae_C368-T01_good_140.870
SRR6049661Rhizomagastrodiae_C368-T04_good_140.800
SRR6049662Rhizomagastrodiae_C368-T01_good_133.310
SRR6049663Rhizomagastrodiae_C368-T01_good_136.770
SRR6049664Rhizomagastrodiae_C368-T10_good_134.630
SRR6049665Rhizomagastrodiae_C368-T10_good_134.630
SRP279888GastroGastrodia elata tuber 46.25
JuvenJuvenile tuber59.70
Mother_GastroMother tuber of Gastrodia elata 40.50
Mother_JuvenMother tuber of Juvenile 36.61