Detail information of GWHGAAEX005248/evm.TU.scaffold_16.226


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08112.00E-113SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17
nrgi|672171722|ref|XP_008805935.1|1.77E-164PREDICTED: syntaxin-22-like [Phoenix dactylifera]
Swissprottr|P93654|SYP22_ARATH7.00E-143Syntaxin-22
trEMBLtr|A5BYQ4|A5BYQ4_VITVI9.00E-156Putative uncharacterized protein {ECO:0000313|EMBL:CAN75135.1}
TAIRAT4G177302.00E-113syntaxin of plants 23

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002470220317037226-
Transcript Sequence

Network for GWHGAAEX005248

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14523.5Syntaxin_2311301.30E-29
PF05739.18SNARE2182691.30E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006886Biological Processintracellular protein transport
GO:0016192Biological Processvesicle-mediated transport
GO:0005484Molecular FunctionSNAP receptor activity
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms192.340
SRR2545915Juvenile tuber225.660
SRP108465SRR5643513five period of Gastrodia elata87.600
SRR5643514five period of Gastrodia elata75.970
SRR5643515five period of Gastrodia elata79.570
SRR5643524five period of Gastrodia elata71.280
SRR5643525five period of Gastrodia elata165.870
SRR5643528five period of Gastrodia elata122.720
SRR5643658five period of Gastrodia elata178.780
SRR5643659five period of Gastrodia elata117.440
SRR5643660five period of Gastrodia elata124.140
SRR5643661five period of Gastrodia elata121.700
SRR5643662five period of Gastrodia elata158.960
SRR5643663five period of Gastrodia elata154.040
SRR5643664five period of Gastrodia elata193.530
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1136.380
SRR6049655Rhizomagastrodiae_C368-T10_good_1179.500
SRR6049656Rhizomagastrodiae_C368-T07_good_1122.400
SRR6049657Rhizomagastrodiae_C368-T07_good_1176.020
SRR6049658Rhizomagastrodiae_C368-T04_good_1202.070
SRR6049659Rhizomagastrodiae_C368-T04_good_1248.640
SRR6049660Rhizomagastrodiae_C368-T01_good_1163.430
SRR6049661Rhizomagastrodiae_C368-T04_good_1174.920
SRR6049662Rhizomagastrodiae_C368-T01_good_184.710
SRR6049663Rhizomagastrodiae_C368-T01_good_1122.290
SRR6049664Rhizomagastrodiae_C368-T10_good_195.780
SRR6049665Rhizomagastrodiae_C368-T10_good_195.780
SRP279888GastroGastrodia elata tuber 163.86
JuvenJuvenile tuber115.56
Mother_GastroMother tuber of Gastrodia elata 144.72
Mother_JuvenMother tuber of Juvenile 136.34