Detail information of GWHGAAEX005250/evm.TU.scaffold_16.229
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|337745718|ref|YP_004639880.1| | 2.00E-28 | beta/alpha-amylase [Paenibacillus mucilaginosus KNP414] |
| nr | gi|672177398|ref|XP_008808792.1| | 0 | PREDICTED: beta-amylase 8 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9FH80|BAM8_ARATH | 0 | Beta-amylase 8 |
| trEMBL | tr|V7CIY1|V7CIY1_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW30089.1} |
| TAIR | AT5G45300 | 0 | beta-amylase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000024 | 7060574 | 7087753 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005250
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05687.12 | BES1_N | 46 | 208 | 7.70E-47 |
| PF01373.16 | Glyco_hydro_14 | 256 | 647 | 6.60E-76 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | BES1 |
| Carbohydrate-Active enzymes Family | GH14 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01177 | E3.2.1.2 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Starch and sucrose metabolism | map00500 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000272 | Biological Process | polysaccharide catabolic process |
| GO:0016161 | Molecular Function | beta-amylase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 26.750 |
| SRR2545915 | Juvenile tuber | 24.800 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.680 |
| SRR5643514 | five period of Gastrodia elata | 14.090 | |
| SRR5643515 | five period of Gastrodia elata | 12.280 | |
| SRR5643524 | five period of Gastrodia elata | 14.460 | |
| SRR5643525 | five period of Gastrodia elata | 12.350 | |
| SRR5643528 | five period of Gastrodia elata | 10.280 | |
| SRR5643658 | five period of Gastrodia elata | 10.890 | |
| SRR5643659 | five period of Gastrodia elata | 15.640 | |
| SRR5643660 | five period of Gastrodia elata | 16.320 | |
| SRR5643661 | five period of Gastrodia elata | 15.380 | |
| SRR5643662 | five period of Gastrodia elata | 16.900 | |
| SRR5643663 | five period of Gastrodia elata | 14.400 | |
| SRR5643664 | five period of Gastrodia elata | 14.900 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 26.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.470 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 22.350 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 29.380 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 41.100 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 46.300 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 33.330 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 35.490 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 21.340 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 29.390 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.670 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.670 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 24.34 |
| Juven | Juvenile tuber | 20.59 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 22.72 | |
| Mother_Juven | Mother tuber of Juvenile | 27.67 |