Detail information of GWHGAAEX005257/evm.TU.scaffold_16.237


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|719999764|ref|XP_010255823.1|1.56E-96PREDICTED: growth-regulating factor 4-like [Nelumbo nucifera]
Swissprottr|Q6AWY4|GRF5_ORYSJ5.00E-76Growth-regulating factor 5
trEMBLtr|U5D2P7|U5D2P7_AMBTC2.00E-90Uncharacterized protein {ECO:0000313|EMBL:ERN15677.1}
TAIRAT3G139605.00E-35growth-regulating factor 5

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002472027847217256+
Transcript Sequence

Network for GWHGAAEX005257

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08880.10QLQ17511.10E-13
PF08879.9WRC841266.30E-20
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRF

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005524Molecular FunctionATP binding
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.240
SRR2545915Juvenile tuber1.060
SRP108465SRR5643513five period of Gastrodia elata2.730
SRR5643514five period of Gastrodia elata3.380
SRR5643515five period of Gastrodia elata2.010
SRR5643524five period of Gastrodia elata3.030
SRR5643525five period of Gastrodia elata2.830
SRR5643528five period of Gastrodia elata2.230
SRR5643658five period of Gastrodia elata1.800
SRR5643659five period of Gastrodia elata0.840
SRR5643660five period of Gastrodia elata1.330
SRR5643661five period of Gastrodia elata1.070
SRR5643662five period of Gastrodia elata1.190
SRR5643663five period of Gastrodia elata0.910
SRR5643664five period of Gastrodia elata1.230
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_13.400
SRR6049655Rhizomagastrodiae_C368-T10_good_15.690
SRR6049656Rhizomagastrodiae_C368-T07_good_14.420
SRR6049657Rhizomagastrodiae_C368-T07_good_14.040
SRR6049658Rhizomagastrodiae_C368-T04_good_13.490
SRR6049659Rhizomagastrodiae_C368-T04_good_12.130
SRR6049660Rhizomagastrodiae_C368-T01_good_12.960
SRR6049661Rhizomagastrodiae_C368-T04_good_15.250
SRR6049662Rhizomagastrodiae_C368-T01_good_16.800
SRR6049663Rhizomagastrodiae_C368-T01_good_12.930
SRR6049664Rhizomagastrodiae_C368-T10_good_15.760
SRR6049665Rhizomagastrodiae_C368-T10_good_15.760
SRP279888GastroGastrodia elata tuber 1.03
JuvenJuvenile tuber2.94
Mother_GastroMother tuber of Gastrodia elata 1.82
Mother_JuvenMother tuber of Juvenile 2.08