Gene detail

Detail information of GWHGAAEX005261/evm.TU.scaffold_16.241

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|385805025\|ref\|YP_005841425.1\|	5.00E-24	DNA repair helicase Rad3 [Haloquadratum walsbyi C23]
KOG	KOG1132	0	Helicase of the DEAD superfamily
nr	gi\|672116405\|ref\|XP_008781366.1\|	0	PREDICTED: Fanconi anemia group J protein homolog [Phoenix dactylifera]
Swissprot	tr\|Q8W4M7\|ERCC2_ARATH	8.00E-23	DNA repair helicase UVH6
trEMBL	tr\|B9R8Q0\|B9R8Q0_RICCO	0	Brca1 interacting protein helicase 1 brip1, putative {ECO:0000313\|EMBL:EEF52880.1}
TAIR	AT1G20720	0	RAD3-like DNA-binding helicase protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000024	7352523	7393773	-

Transcript Sequence
>GWHTAAEX005261 ATGCTCGCCGCCATGGATGCCCATCCAAACTCAAAACCTACTCCCAGCGCCAAATCCAACGTCAAATCCAGCGTCTACCACATCAGCGGCGTCCCCGTGGAGTTCCCATACAAACCCTACGGCTCCCAACTTGCCTTCATGAGCCGCGTCATCTCCACCCTCGACCGTGCGCGTCAGCAAGGCCATTGCCATGCCCTCCTCGAGTCCCCCACCGGCACCGGTAAAACTCTGTCCCTTCTGTGCTCTTCCCTTGCGTGGCAGCGACACCAAGGTCGACAACTCAATGTCTGCATCTCCCCTTCCAATGCCTCGGAGCCTCCTGAAATCATCGATCCTCTACTCCACGGAGGTGGTTTCATTCCCGACCCCCATCCATATGGGAATTCAGAGAAGCCCTTACAAGCAACGAAGACTAAGAATCCGAAAAAGAATGTTGCTCCCAAGATTTATTATGCTTCGAGAACGCATTCTCAGATCAGTCAAGTGATTCGGGAATACAGGAAGACATCTTACCGCGTGCCAATGGCTGTTCTGGCATCACGAAAGCACTATTGTACCAACAAGTATGTATGCAGTAAGGAAAATGTGGATGAACTATGTAAATCACTCTTGAAGGATTCCTCTGGAGGTTGTCTTGAGTTCAAAAATGCAAATAAAGTTAAAAGCCACCCCTCTCTTCAGATAGGTGAATGCTTTGAGGTTCATGATGTAGAGGATCTAGTGAGGATTGGTCGACGTGTTAAAGGTTGTTCATACTTTGCTGCTCAAAGTCTTGCAGCTGATGCTAAGTTAGTCTTTTGTCCATATAGCTACGTTATAAATCCAATTGTGCGGAAAGCCATGGATGTGGATATCAAAGGATGCATTCTAATTCTTGATGAGGCCCACAACATCGAAGACATGGCACGTGAAGGTGGTAGTGTGGATATTGAAGAAGAAGTGCTTCATGCACTTCAAGAAGAATTAGGGCAGTTGTGTATCGATGAGAATCTCGTGGAGACATACAGACCGCTATATGATGTCATTGAGGGAATTGTTAGTTGGATTAACATCAAGAAAGAAAACTTGCAGAAATATGAATTCGAGCGTTACATTTCATATTGGACTGGTGAGAAGGCCAAACAGGAGCTTCATAAAATTGGAATTTCTCAATATTGCTTCCCGGTTCTTCAAGAATGTGCCATAAAGGCAATCAAAGAAGCAATCGACGCAGCACCTGGTGATGCACATTTAACTGGAATTTCATTAATAACACTTGAAGGACTCTTTTCCTCGCTAAGTTATTTTTTCTCTGGGAATGACTGTCATGCAAATGATTATCAACTTGCATTGCAAAGATATGTCAAGCGGGATGGGAGTAATGCTGCCCGTGACTGGACAATATCTTTAAGCTTGTGGTGCTTAAACCCTGCTGTTGTCTTTAGTGATATTGCAAATTTATCTCTCTCAGTGATTCTTACATCCGGAACGCTTTCTCCAGTTGGTTCTTTCTCATCTGAACTTGGTGTACGGTTTGATTCTTGCATGGAAGCTCCACATGTAATTAATATGGAGTCTCAGCTTTGGGCAGCTGTGGTTACTTCTGGGGCAGGAAATGTTCAGTTGAATGCAAGCTATAAAACTGCTGATAGCTATGCTTTCCAGGATTCACTGGGAGCCACATTGGAGGAAATTTGTAAAATTGTACCAGGTGGTGCTCTAGTCTTCTTCCCTAGCTACAAATTGCTAGAGAAGCTGCATGATCGTTGGCATCAGACGGGACAATGGTCTAAGTTAAACATGCAAAAGGACTTCTTCATTGAACCAAGGGGAAGTTCCAGTGACTTTGAGCCAGTTCTGAAAGACTATTATGATACTATTTGTGGGAAAACTAAACCTACACCGGGAAAAATTAGAATCGGTCTAAAACGGGTTCTCAAATTTCCTGGCATCAAAGATTCTAATCAAAATCCAAACAAAGGAGCAGCCTTTCTTGCTGTTTGTCGAGGAAAAGTATCAGAAGGAATCGACTTCTCAGATGACAATGCCAGAGTAGTTGTGATCGTTGGCATTCCATTTCCCAACAAAAATGACATCCAGGTGATGTTGAAAAAGAAATTTAATGACACTTACAAATCTTCTAAAAATCTTTTAAGTGGGAGTGAATGGTACTGCCACCAAGCATTCCGTGCATTAAATCAAGCTGCAGGTCGTTGCATCAGGCACAGGTTCGATTATGGGGCTATAATTTTGTTAGATGAGCGTTATACGGAGCAACGCAATCTTCTCTATGTATCAAAATGGTTGAGGAGCTCAATTAAAACTTTTAAAAACTTTGACGACTCATTGAAAGGACTGCAAACCTTCTTCAGAGAGGCAAAGCAACAGCAAAATTTGGAAGAAAACTTCAAAGAACTTGCCAATTTTAGTAGTGACAAGGAGAAACTGCTGCCTTCAAATCAGGCGACTGAACCTGTGAAGAATTTGGTAAAGACGTTCAACAATTATACTGGAAAGAATGATTCAGATAAAACGTCACCAGTCAATACCAATAAGTTTACGATGGCATCAGCTTGTTTACTAAATGATAATTCCTCTGTACTCCAGCCACAAACTCCTGTAAATATGAGAAAAACTGCAGAACAGATCAATGAGAAATTCCTTAACTTAAACAGAAAGGTTGATTTCCAAACTGAATCCCTGAATGCGACCTTCAGTTCACAATCGGTCTCGCCTGGGAGCAGTCCAGACTTGCAAAGGACTGTGAAAGGCACTCCTTGTGCCACCTCCAGGGCGGAACCTTTCACAAGACTTGAAACATTACATCAGTTATCAGAAGTTCCATTATCCGAATCACTCGACACAACTTCGAAAGGATTAGCTTCACAGAATTCCTGTGCATTAGCAGAAACCCCCAAAAAATTGGCATCTCCGGTATCTTTTGACGCCAAACAAGATCCACATTTTGATATGGGTATTAACTCTAGCAATCATAAGAAAAGAAGGCTGATGCATTTGCAGAACACTAGCCATCATTCTGATGCAGCCTCTTTACAGTTTACCCTTTCTAATAGCATCGTTAACCCTAAAGAAATAGATAAAGCATCTGAATATGAGAAAGTGAAACAAGTGTCTCTTATATTAGAAAATCAGAATACGCCCTTTTGGCCTTCTTCTAATGATTGCGAAGAAATGGAGCTGCATGTCAGTTGCATGTCCTGCCGAGAACCTCTGGGCTTACCTGAGAACAGGTTTCTTGTTAAAGGCCTCTTCGTGGTGTCATCAAAAGCCTATTTGTCATATACAAATTTACATGAATCTTTAGTCTCGTTCATGCCGGATTGTCTTTCGAAAATTCCGCCAGCAATCACACGTGTATTGAGCTCTGAAATTACGGTCATCAATGAGCGAATCATTAGAGCCCTCCCAAATAATTTCTCAGCACACGGAGTATGGTGTGAAGAAGACGGTTGCGTTTTCAGGGCCGTTTTTTGTCCTTTTTGCACTGAGAATGATAATTGCCTAGGAGTTCGAGTGCTCGCTACGGATGCTACAAATGTTAATTTACTAAACAAGGTTCTATTTTTTGCAGACCGCTTATGTATCATTAAGCCAAAAGCACTCGATGAGAGCGCTCCGCCCAGAAGCTGCAATTCTCTAGATAAGTGCTCTGATTATGTTGAAAATGACGATTATAGTAGCAAATATTCCCTTGTTAAACCTGCTTATGATACAACAAGACAGAAGGCAGCTGAAAATAAACAGGTTCCTCAGAAGCCTGCTGGCAATAATCATCCCAAGCCAGTAGAAATTGAGAAATTTGCTTATAAACCCAAAACCGAATCAGTTTACTTTGATTCCCAGCCTGGGTCAGGTCCTTGTCAACTCAAGGCCTCTAATATCTTAATCACATCAAAATCTAAGCTTAAACTGCCCAGAAGGCTATCCGATTCCTCTAATATGAAGAACTCTCGTATGGAAGAAGCTTCAGAAAATTCTTAA

Network for GWHGAAEX005261

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06733.14	DEAD_2	151	314	5.50E-39
PF13307.5	Helicase_C_2	555	764	3.00E-58

Protein Sequence

>GWHPAAEX005261
MLAAMDAHPNSKPTPSAKSNVKSSVYHISGVPVEFPYKPYGSQLAFMSRVISTLDRARQQGHCHALLESPTGTGKTLSLLCSSLAWQRHQGRQLNVCISPSNASEPPEIIDPLLHGGGFIPDPHPYGNSEKPLQATKTKNPKKNVAPKIYYASRTHSQISQVIREYRKTSYRVPMAVLASRKHYCTNKYVCSKENVDELCKSLLKDSSGGCLEFKNANKVKSHPSLQIGECFEVHDVEDLVRIGRRVKGCSYFAAQSLAADAKLVFCPYSYVINPIVRKAMDVDIKGCILILDEAHNIEDMAREGGSVDIEEEVLHALQEELGQLCIDENLVETYRPLYDVIEGIVSWINIKKENLQKYEFERYISYWTGEKAKQELHKIGISQYCFPVLQECAIKAIKEAIDAAPGDAHLTGISLITLEGLFSSLSYFFSGNDCHANDYQLALQRYVKRDGSNAARDWTISLSLWCLNPAVVFSDIANLSLSVILTSGTLSPVGSFSSELGVRFDSCMEAPHVINMESQLWAAVVTSGAGNVQLNASYKTADSYAFQDSLGATLEEICKIVPGGALVFFPSYKLLEKLHDRWHQTGQWSKLNMQKDFFIEPRGSSSDFEPVLKDYYDTICGKTKPTPGKIRIGLKRVLKFPGIKDSNQNPNKGAAFLAVCRGKVSEGIDFSDDNARVVVIVGIPFPNKNDIQVMLKKKFNDTYKSSKNLLSGSEWYCHQAFRALNQAAGRCIRHRFDYGAIILLDERYTEQRNLLYVSKWLRSSIKTFKNFDDSLKGLQTFFREAKQQQNLEENFKELANFSSDKEKLLPSNQATEPVKNLVKTFNNYTGKNDSDKTSPVNTNKFTMASACLLNDNSSVLQPQTPVNMRKTAEQINEKFLNLNRKVDFQTESLNATFSSQSVSPGSSPDLQRTVKGTPCATSRAEPFTRLETLHQLSEVPLSESLDTTSKGLASQNSCALAETPKKLASPVSFDAKQDPHFDMGINSSNHKKRRLMHLQNTSHHSDAASLQFTLSNSIVNPKEIDKASEYEKVKQVSLILENQNTPFWPSSNDCEEMELHVSCMSCREPLGLPENRFLVKGLFVVSSKAYLSYTNLHESLVSFMPDCLSKIPPAITRVLSSEITVINERIIRALPNNFSAHGVWCEEDGCVFRAVFCPFCTENDNCLGVRVLATDATNVNLLNKVLFFADRLCIIKPKALDESAPPRSCNSLDKCSDYVENDDYSSKYSLVKPAYDTTRQKAAENKQVPQKPAGNNHPKPVEIEKFAYKPKTESVYFDSQPGSGPCQLKASNILITSKSKLKLPRRLSDSSNMKNSRMEEASENS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15362	BRIP1, BACH1, FANCJ	Homologous recombination	map03440
K15362	BRIP1, BACH1, FANCJ	Fanconi anemia pathway	map03460

Gene Ontology

GO term	Ontology	Name
GO:0006139	Biological Process	nucleobase-containing compound metabolic process
GO:0003676	Molecular Function	nucleic acid binding
GO:0016818	Molecular Function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0003678	Molecular Function	DNA helicase activity
GO:0003677	Molecular Function	DNA binding
GO:0005524	Molecular Function	ATP binding
GO:0004386	Molecular Function	helicase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.860
SRP064423	SRR2545915	Juvenile tuber	1.280
SRP108465	SRR5643513	five period of Gastrodia elata	1.010
	SRR5643514	five period of Gastrodia elata	1.370
	SRR5643515	five period of Gastrodia elata	0.680
	SRR5643524	five period of Gastrodia elata	0.990
	SRR5643525	five period of Gastrodia elata	0.490
	SRR5643528	five period of Gastrodia elata	0.240
	SRR5643658	five period of Gastrodia elata	0.230
	SRR5643659	five period of Gastrodia elata	0.320
	SRR5643660	five period of Gastrodia elata	0.330
	SRR5643661	five period of Gastrodia elata	0.390
	SRR5643662	five period of Gastrodia elata	0.580
	SRR5643663	five period of Gastrodia elata	0.290
	SRR5643664	five period of Gastrodia elata	0.350
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.510
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.080
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.810
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.550
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.240
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.060
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.630
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.270
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.010
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.890
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.730
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.730
SRP279888	Gastro	Gastrodia elata tuber	2.49
	Juven	Juvenile tuber	2.24
	Mother_Gastro	Mother tuber of Gastrodia elata	6.20
	Mother_Juven	Mother tuber of Juvenile	3.82