Gene detail

Detail information of GWHGAAEX005263/evm.TU.scaffold_16.243

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|672116309\|ref\|XP_008781312.1\|	PREDICTED: probable rhamnogalacturonate lyase B isoform X1 [Phoenix dactylifera]
trEMBL	tr\|B9FYH2\|B9FYH2_ORYSJ	Putative uncharacterized protein {ECO:0000313\|EMBL:EEE69123.1}
TAIR	AT1G09910	Rhamnogalacturonate lyase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000024	7425978	7447960	+

Transcript Sequence
>GWHTAAEX005263 CTGCCATTGTACCCTGCCGAAGGAATGGTGGAGGTAAGACTCCCCCCAACTGGATTCTCTGAAGCAATTAAACCTCTATCCTTTGCATTCTCTCCATTCTACACTCTACCAAAAGCTTAGCGGGAGCTAAAGGCTGCTGGAGAAAACGGTGTCTAGAGAAAAATCCCCAACCGACAAACCCTTCTTATTCCTTGGCTTTAAGATCTTGGCTTCCAAGAGATGTATTCTTTGTTGCCAAACCAAGGAAAGCAGCAGCCCAAAGATGTCGTTTTCCCTCAGAAATAACATAGTGGCTTGACCAGGTGAACTCTAATTATGTATCTCCTTAGCAAGTTAAGGAAAGCCATAGGGAAGCGCCACTCGAGCCATTGTGCTTCTGCTCCAATGGCACCAATGGGAGTGTGTTTGCACGTTCAAGATCGATATGTGGTGATAGAAAGCAGCATACTCAAGCTCACGTTATCGAATCCCGGGGGGATTGTTACTGGAATTCAGTACAATGGTGTTGATAATTTGATGGAGATTCTTAACCAGGAAGATAATAGAGGGTATTGGGATCTAGTGTGGAACGAACCAGGAGGAACAGGAATTTTTGATGTGATAAAAGGCACGGACTTTAAAGTTATACTAGAAGATGAGGATCAAGTAGAAGTTTCATTCACAAGGAGATGGGATCTCTCCTTAAAAGGCACTCTTGTTCCCTTGAATATTGACAAGAGGTTTATTGTGCTCCGTGGCTCTTCAGGGTTTTATACTTATGCCATCTATGAGCATATGGAAGGATGGCCTGATTTCAATATGGCAGAAACTCGTGTTGCTTTTAAGCTTAGAAAAGATATGTTTCACTACATGGCGATGGCTGACAATAGGAAAAGATTTATGCCAATGCCTGATGATCGGATGGCTGGAAGATGCCAACAATTAGCATACCCTGAAGCTGTTCTCCTAACAGATCCAGTCTATCCAGACCTTTCCGGCGAGGTGGATGACAAGTATCAGTATTCTTGCGACAACAAAGACAACAAGGTTCATGGCTGGATATCATTTGATCCTCCTATTGGCTTCTGGCAGATTACACCCAGCGACGAATTTCGTACTGGGGGGCCCACAAAACAAAATCTTACTTCTCATGTTGGTCCTACAACCCTAGCTATGTTTGCTAGTGCTCACTATTCTGGAGATGATCTTGTGCCTAAATTCAGGAATGGAGATTACTGGAAAAAGGTCTTTGGTCCAGTGTTCATGTATCTTAATTCCACCTGGGAAGAAACTGACCCATATATTCTCTGGGAGGATGCAAATTTTCAGATGAAAACTGAAGTAGAGTGTTGGCCATATGCTTTCCCTCTTTCAGAAGATTACCAGAAGGCTGGACAGAGAGGTTCTGTTTCTGGCAGGCTACTCGTTCGGGATAGGTACATTAATGAACATGATCTGTATGCAAGTTCAGCGTACATTGGGTTGGCGTTACCAGGAGACGCGGGTTCATGGCAAAGAGAATGCAAGGGGTATCAATTTTGGACAAGGGCTGAAACTAATGGCTTCTTCTCGATCAACAGTATTTGTTCTGGAGACTACAACCTTTATGCATGGATACCTGGGTTTATTGGAGATTACATGTATTGTACGACTATAACCATTACATCAGGAAGCTGTATTGATCTTGGTGACCTTCTGTATCAACCTCCAAGAGATGGCCCTACTCTTTGGGAGATTGGATATCCTGACCGCTCGGCTGCTGAGTTTTATGTTCCAGATCCAAATCCCAATTATGTAAACAAGCTTTATCTAAATCATCCTGATAGATTTAGGCAATATGGACTTTGGGAGAGATACACAGATTTATATCCAGACTCTGATCTTATTTATACCGTTGGTGCTAGTGACTTCACGACGGATTGGTTTTTTGCCCAGGTTACCAGGAGAAACGGCCAGAACTCCTATTCACCAACCACTTGGCAGATCAAATTCAAACTTGACTATGTCAAGCAAACTGGATCATACATGTTGCGGGTTGCAATTGCTTCTGCTACCTTGTCTGAATTGCAGGTTCGATTCAATGATTCCAATGCTGTATCTCCTCACTTCTCAACTGGACTCTTTGGTAGAGACAACTCAATAGCAAGGCATGGAATCCATGGATTGTATTGGCTGTACAATATTGTGGTACAAAACAGCTGGCTTATTGAGGGGGAGAACACAATTTTTCTCACACAAGCAAGAAGCACTAGCCCTTTTCAAGGAATAATGTATGATTATATTCGTCTAGAAGAGCCATCAGACTCCAGTTCACGGAAAAGCAGTTTTCCATGAACATAGAAATGGCTTCTCATACTAGTCTTGTGAATAATAGAGGGCTTTAGAAAAGTGCAAACATATCAATGAAATTATATTGCTTTGGTTGTATACATGTAGTGATTGAA

Network for GWHGAAEX005263

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06045.10	Rhamnogal_lyase	29	223	1.50E-88
PF14686.5	fn3_3	377	449	2.60E-24
PF14683.5	CBM-like	463	651	1.70E-57

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	PL4

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0030246	Molecular Function	carbohydrate binding
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.560
SRP064423	SRR2545915	Juvenile tuber	0.980
SRP108465	SRR5643513	five period of Gastrodia elata	0.540
	SRR5643514	five period of Gastrodia elata	0.570
	SRR5643515	five period of Gastrodia elata	0.710
	SRR5643524	five period of Gastrodia elata	0.610
	SRR5643525	five period of Gastrodia elata	0.700
	SRR5643528	five period of Gastrodia elata	1.250
	SRR5643658	five period of Gastrodia elata	0.630
	SRR5643659	five period of Gastrodia elata	0.130
	SRR5643660	five period of Gastrodia elata	0.090
	SRR5643661	five period of Gastrodia elata	0.170
	SRR5643662	five period of Gastrodia elata	0.000
	SRR5643663	five period of Gastrodia elata	0.090
	SRR5643664	five period of Gastrodia elata	0.110
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.350
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.370
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.490
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.410
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.080
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.060
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.300
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.960
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.300
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.540
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.650
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.650
SRP279888	Gastro	Gastrodia elata tuber	0.20
	Juven	Juvenile tuber	0.08
	Mother_Gastro	Mother tuber of Gastrodia elata	0.40
	Mother_Juven	Mother tuber of Juvenile	0.30