Gene detail

Detail information of GWHGAAEX005265/evm.TU.scaffold_16.245

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0955	9.00E-90	PHD finger protein BR140/LIN-49
nr	gi\|672157058\|ref\|XP_008798221.1\|	4.10E-145	PREDICTED: bromodomain-containing protein DDB_G0270170-like [Phoenix dactylifera]
Swissprot	tr\|Q338B9\|GCN5_ORYSJ	3.00E-12	Histone acetyltransferase GCN5
trEMBL	tr\|W9SX21\|W9SX21_9ROSA	5.00E-125	Bromodomain and PHD finger-containing protein 3 {ECO:0000313\|EMBL:EXC31535.1}
TAIR	AT1G20670	9.00E-90	DNA-binding bromodomain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000024	7457231	7482769	-

Transcript Sequence
>GWHTAAEX005265 ATGGGGAAGCCTGTGGAGAAGAAGAAAAAGAAAGGCCGCCCATCTCTCCTCGATCTCCAGAAGCGCAGCATCCGCCTTCAGAAGCAACGAGAGCAACAGAAGCAGAAGCGAAACCCTAACCCTAATGCTATTCCAAATCCATATGCCCGATTCCATAACTCTTCTGCCGGCCGTTGTTCCGCTCGACGAAACCCTATCCCTGAGCATAAGCCGGCTTCGCTTTCCAAGGACGGGACTGAGGCGCTGGCGGAAGCTTCAATGGAAGATGATGAGGATGATGACGAACCAAAACAAAGGAGAAAGGAGAAAAAGCTCAAGCTAGTCCTTCACCTTCCTCAATCCAACACCAATTCATCCGATTTGACATCCTGCGCAACTGAATTGAACGGCGCCGACTCCAAGAAGCGAGTTCTTGACACCATGACAAAGACGGAAGGGAAAATTTCTGTCTGGAAAACGACAGAGGCTCCTATAGTCTGTCCAGGTGGGACTTCTGATTTGGGCCCCACAACGCCTCTGCCAGACAAAAAGTTATTGAATTTCATACTGGATAGGCTGCAGAAGAAGGATATCTATGGTGTATTCTCTGAACCCGTGGATCCAGAAGAGCTTCCAGATTATCTTGATATCATCAAACGTCCAATGGATTTCAGCACTGTGCGGAAGAGGCTTTCGGACAGTGCTTATAAGGATTTGGAGCACTTTGAGGAAGACATTTTCTTAATAAGCTCAAACGCTATGCGCTACAATTCGCCGGACTCAATATACTTTAGGCAGGCGAGATCCATACATGAGCTTGCCAAAAAAAGCTTCGAGAACTTGAGGCAAGAGAGTGAAGGTGGCAATCGGGAACCGAAAGTTGTGCGCCGAGGTAGGCCACCTGGCACTGGTAAGAAAGGTATCAAGCGGCCAGTTGGCAGGCCTCCTTCTGAGCGTACAGTTTCTGAATTCTCTTCTGGAGCTTCCCTTGCAAATGCGCTTAATGGCAACCATTCTTCTTCTTCTTTTCTGAGGAGCGATTTTCATACAAAAAGATCAGGATTGGATCAACAAAGAGCAGCTGATGTGTCTTTCAGGTCTGTTCAGTTCATTCCCAGTTCTGAAGCATATATTCTCAACTGCGGAGATAAATCAGAGAGAAATGAAGATTATTCAGGGTCTGCATTGAATGGCTTCTTAAATTATGGAAAGAAACTTGCTGTCATGGACGATAGTCGCCGAAATACATACAAGCAATGCCGGTTATTATCCATGGCTGAGCTTCCTGTGTTGACCGCTCTTGACGGGGAAAGAAAGATCTTGTTTCAGGTCGGGTTTCACATCGATCATACATATGCACGGAGCTTGGCTCGTTTTGCCGCAAACCTCGGCCCCATTGGCTGGCAGATTGCTGCCAAGCAGATCGAAAAGGTCCTTCCCTTAGGGATGAAATTTGGGCCTGGTTGGATTGGGGATATTGATACCCACCAATCTCATTTTGACCATCCGCAACCATTTCCACCTATTCACTCTTCTTCTACGCAGACAAATATCGTGGCCTCATCAAATGGCAATCAACGTTCAGCAAAACAAGAGGCGCTTCCTCCGAATCATTTCAGAGCTCCGCCTCCTTCATGTTCATCTCCTATACCCAATTTTGCTCATGAGAAATTCCCGCCTTCTCTCTCCGAAACACTTGCCCGCCAACATTCTGTTTTGGAAAGCTTCATCAGTTTAGAGGGAGGAATTACAGTTTCTAGCAACAGCAGCAGCAGCAGTTCTGGCCATGAATTTCCTCCAGACTGTGACAGGTCCTTCAGGCCAGAAATCAATCCAGACCAAGACATAAATCTTGGAATCCTTTTGCCAAACCCAAGCAAAGGACTTTGGCCTGTTGTTCAAGTTGATTCACAGCAATCTGATTTGTTATTGCAGCTGTAAAACAGGCCTTTTATTTATCTCATACTTATCGAGTTGGTTCTAGAGTTCCCCATGCGAAAGAGATTCATTCATTTATTTTCTTGCTCGAATTCGATCCCGCAGATTGCCATCTGACAGAAGAATATCGGTTTGGTGACATCCTATTCTAACCATGGTTAGTTGTGTGCCTGGCCTGAGATTTTGAAAAACTAATCTTGGGAAGGCCCTTAGAGGAAAGGATAAAAGTTAGGATATTTTATAAAGAGCGAGGTTTTATAAAGAGTATGACCCCGATGCTCAAGTTAGGATGTTTCATTGAAGTGGTTTAGTTGGCTTTGAACTACTTTGAGGCCTCTTATTTTACGAAAAAGGCAAAATTTGCTTTTTTCTTTACGTTATTTTTTCTTTTTCTTTTTTAATTTAGATGCAAGAGCTGTTTCTTTGGCTCTTTTTATTCAGTTATTTCAGTTGACCTTTGTCTAATTTTATAGCAAACGCCCAGTTTTTTTTTTTTAATATAGCAGTAGTTTCACTGTGTACAGATTATATGATAAATATATGTCACCATACCATATTTTGCCCTTTAATTTGATATGGT

Network for GWHGAAEX005265

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00439.24	Bromodomain	181	261	3.90E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	36.810
SRP064423	SRR2545915	Juvenile tuber	23.490
SRP108465	SRR5643513	five period of Gastrodia elata	17.910
	SRR5643514	five period of Gastrodia elata	14.940
	SRR5643515	five period of Gastrodia elata	14.180
	SRR5643524	five period of Gastrodia elata	11.540
	SRR5643525	five period of Gastrodia elata	28.330
	SRR5643528	five period of Gastrodia elata	25.780
	SRR5643658	five period of Gastrodia elata	25.360
	SRR5643659	five period of Gastrodia elata	18.970
	SRR5643660	five period of Gastrodia elata	21.110
	SRR5643661	five period of Gastrodia elata	19.170
	SRR5643662	five period of Gastrodia elata	20.470
	SRR5643663	five period of Gastrodia elata	24.580
	SRR5643664	five period of Gastrodia elata	26.540
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	30.070
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	37.410
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	23.160
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	36.790
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	41.420
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	47.330
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	35.420
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.160
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.580
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	21.100
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.830
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.830
SRP279888	Gastro	Gastrodia elata tuber	37.51
	Juven	Juvenile tuber	47.19
	Mother_Gastro	Mother tuber of Gastrodia elata	32.41
	Mother_Juven	Mother tuber of Juvenile	52.40