Gene detail

Detail information of GWHGAAEX005274/evm.TU.scaffold_16.254

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|308048254\|ref\|YP_003911820.1\|	2.00E-06	hypothetical protein Fbal_0532 [Ferrimonas balearica DSM 9799]
nr	gi\|672141203\|ref\|XP_008794422.1\|	0	PREDICTED: protein GAMETE EXPRESSED 2 [Phoenix dactylifera]
Swissprot	tr\|F4K4R6\|GEX2_ARATH	0	Protein GAMETE EXPRESSED 2
trEMBL	tr\|D7SYB9\|D7SYB9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI22976.3}
TAIR	AT5G49150	0	gamete expressed 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000024	7660413	7747820	+

Transcript Sequence
>GWHTAAEX005274 TTGGATCGTTGAGCGAGGAATCGATGGCACTGGCATTTGTACTGCTCCTGCTTGCATTTTCGGCAGCCCGCATGCATGAAGGTTTGGAAGTTAAAATTCCTAGTCTCAGCTTTGCTGTCAGTTGGCTGGATGATAGAACCACCTATCAAGCTGGTGATATGGCTACTGTTAAGATTAGGTTATTCAACAATTCCCTAAGTGGTGATCTTAGGCCATACAATATGCACTTCTCGGTTTTAGTAAATGGGAAGAAAGGAAATAGCTCATATATATCGACTGTATTTCCTTACATTGATGACGATCCTGAATTTTGGAATATATCTTTTACTCCGATCCTAGTTGGGAACTTTTCTGTGGTTGTCACAGAAGATTTTTCTGGTGTTACCGATTCATCACTTCATTTCTATGTTATTGCTGGAATTATATACCCATCTGCTTGCCTGCCCTCTTGGATGGATATGTCTAATGAGATTGTTGCTGGGACAAAAGCTTCTTTGCTGGTATATCCTAAAGATGCATTTGGAAATAATGTTTCCTCAGTGGATATAACAACCAAAAATTATTTTACATTGTCAACATCTTATTTGAATGGAGCTGCAGCAGAAAATTTAAATTCCGTTTCTAGTTTTTGGAATGAATTGGGATTTTTTGTCATTGATTTTATTCCCACTGTTGCTGGGAGACTTCTTTTACATGTTTACGGTGACACTCAAGCTTTAAATGGCTCTCCTCTTCCATTTATTTTAAAACCAGGGCCTCTCAATATTGCTAATAGCATGGCCAAATGGAACAATGAAATAAACTCCCTGCAAATTTTCTCAAAGTTGCAGATATTCATTCACCAGAGAGATCAATTTGGGAATCTTGTACCAGGTTTCTATCTTTTCGATGCTCAAGTTGTAAAGAAAACTACAGGATTGTCTATTCCCGTGGCAGATTTGTTGTTTCAAGAGGTGGAATATGGAGTTCAGTTGCTTTCTTATGTTGTAATAGAACCGGGAGACTTTATGATAAATATTTTTTATGCCAAGTTGAATGAAAGCATCTCTAATTTGCCTTATACAGTGTTTGTAGGCTACTGCTGTGGATTAAACAGCTTTGCTAATGGATCTGGTTTAGTTAGTTCTGTTGCTGGTAGACTGTCGCAATTCACAGTTTTCTTGGGAGATGTATATGGGAACCCTTCTCCAGTTGAGGCAGAACATCTTAATGTTGAGATTTGCAGTAGAAATTGTACCTTAATGATCCGGCCAATTATATTTCCATTGAGGGGTCTTAATGGAACATTTCGTGCCCCAATTGCTGGACCGAGTGACATTTCTATAGGAACTCTGGGATATGCCCCAGCTATGTCATCCAAAGGGAATATGACCTTTATTGGGAACTACTCTATCCAGGCAAGTGAGTTTAAGATCACATATATACCTGAAAAGTCTGGGGACTATGAAATAGGCCTATTCTGTGGAAATATTCCACTAAATAAAGGCACTGCTTACTTTATGAAAGTATTGCCAGGTTTTGTTGACACATCAAAGTCAAAGGTTGTTAAATCTGATTCAGTAGTTAGACGAGTTGGAAAAAATGAAGTAATAGTTGAACTTGTGGACTCATTTTGGAATTCTGTGCCATCACAAGAAGCAAATTTGCGGTTGCACATTCAAGGACAAAACAGTTCAGGGCATTTGGAAACAACTTTCGTTGAGAATAAAAATGGATTATATATAGGCTATTATTTACCAAGAAATCCAGGGATTTATAATATATGCATCTCATTTGCAGAAAAGATTCTATCCCCTTGTCCCATCAAAGTTCATGTACATGCAAGGAAATTCTTTCCCGAAGCCAGTAATGACAGTGTTTCTGTTTGGGAAGACGAATCAGTTCTATTTGATGTATTATCCAATGATTATGTTTCAGATGGACAAATTAACCTAATTGAATATTCTAAACCACTTCACGGATCACTCCTTCAATTCGGGAAACTGTTCAGATATACTCCTTTTAAAGGGTATTTTGGAAATGATTCCTTCTCTTACAACATTACTGAATCAAATAACAATGTTGCTATAGGCGTTGCTTTCATATCTGTTCTCTGCAAACCTCCTCAATTTATTTCCTTGCCTCTTCGACTTAATGTGACTGAGGATGTGCTAAGTCCTCAGTTTGGAGGCTTTCCTGGTTTTGAAATAAGGTATTCCAATAAGGAGGATAATGTCACTCTTACCATAAGTGCAAAGTTTGGCTCTGTTTATCTAGCTCCAGGTTGGATTGGGTTTCCTGATTCTTTGGGGGATATGCTTTCAATAAAGAGAGGTGGCAGGACAGGGAAGGACTTGATCTTAGCAGGATCAGTTGATGTTATGAATTCCGCTCTTCAATTGATTCAGTACCTCAGTAACGATAACTTCTACGGAGAAGATACCATCAGCTTATATACCACTAATAAGAACGGTGTACAAGATTCCCATGTCCCAGTTTTTGTTAAGCCTGTTAATGATCCTCCAAAGATTAATGTGCCTAAGTTTATAGTACTTGAGGGGTATGAAACAGGCGATGGTTTTCAAATTTTTGATAAAGAAAGAGATGTATTTAACTTCTCAATCACTGACAGTGATATCATTCATTACCCAGGTAATAAGTCACATTTGATGGTCATGTTTTCTGTGGAAGTGAATGATGGAATTTTAACAACAACTCTTCCTGTTCATCTAATCAAGACAGCTGAATTGAAGATTAAAAGAAGCAACCAGTGGCAACCTTTGCAGACATTTGTCACTATTGCGAACCATTTTATTACCAAAGGAAGAGGAATTCGGTTCCAAGGGACAATTGGGGATTGCAATTATGCAATGCAACGACTGTTTTTTCAGGGTGCAAATCTTGATACCCTGTTGACCATCACTGTTAATGATTTGGGGAGTTACGGCTGCTACTTAAATTGTGAAGAAGATATCATCTCTTTTCCGCTCACAACCGAGGCTATCGTGATTTTAATGAAGAGAAGGCTATTTAATTCAACAACAGCTTTTTTGCTTGGATCAGCTATAATTTTTGAGATTGCAACGCTGTTTATTCTGGGTGGCTTACTTATGTTCTTCATCTGTAAATGCATGGCCGAGCTTCATACCGAAAGAAATATCAGTGATAGTTACAAAAATAACGCTAGGGAGGAGCTTGAGGATCACACAGAGAAGATTGATAACATGCCAAATCAGGATACAGTGAATTTCAATGAAAAATTGGCACTGGGTTCTCCTAGAGTACCTTCATTACCCATCCCACTATCTCTATCAAAGAGGCACTCAAATTTTCGTCGACGATCTCGTCGAAAACTCAAAATGGATGAGATACAGAAGGGCGATATGCTGCTGACGTATGCATCATTCGGCGGTGATTATTGCGCGTCAAATCCTTCCCGCATAGAAATGCAAAACTGGCGTCGGAGCGATTGATGTTTGCAAGCCAAGCAAAACACTTTTTTGGAACCGTAAATTCATTGTTTTGTTGTTTTATAGGTGTTGTTTAAGCTGTATTTTAAATGTTTTTAGAACAGAATTGGCACTGTTTAGCTGTGATGATTGCTTGCAGCAGAACTTAATATTAGCTAGTGGATTGTTGCAAGTTGGATGATTAAACAATAGCCTTAGTCGAATCATGCTTGAGAGACTATCCAGCTGCCTACACAAAGAATATGAAAATTTCTCAAACATTGAAACACTTATAAGCATAATCATTGTTGTGCTAACTATTATTATGCTTGCCTCATGTAGATTTGAAAAGCACGAATTTCC

Network for GWHGAAEX005274

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00630.18	Filamin	353	485	9.60E-07
PF00630.18	Filamin	501	594	8.60E-09

Protein Sequence

>GWHPAAEX005274
MALAFVLLLLAFSAARMHEGLEVKIPSLSFAVSWLDDRTTYQAGDMATVKIRLFNNSLSGDLRPYNMHFSVLVNGKKGNSSYISTVFPYIDDDPEFWNISFTPILVGNFSVVVTEDFSGVTDSSLHFYVIAGIIYPSACLPSWMDMSNEIVAGTKASLLVYPKDAFGNNVSSVDITTKNYFTLSTSYLNGAAAENLNSVSSFWNELGFFVIDFIPTVAGRLLLHVYGDTQALNGSPLPFILKPGPLNIANSMAKWNNEINSLQIFSKLQIFIHQRDQFGNLVPGFYLFDAQVVKKTTGLSIPVADLLFQEVEYGVQLLSYVVIEPGDFMINIFYAKLNESISNLPYTVFVGYCCGLNSFANGSGLVSSVAGRLSQFTVFLGDVYGNPSPVEAEHLNVEICSRNCTLMIRPIIFPLRGLNGTFRAPIAGPSDISIGTLGYAPAMSSKGNMTFIGNYSIQASEFKITYIPEKSGDYEIGLFCGNIPLNKGTAYFMKVLPGFVDTSKSKVVKSDSVVRRVGKNEVIVELVDSFWNSVPSQEANLRLHIQGQNSSGHLETTFVENKNGLYIGYYLPRNPGIYNICISFAEKILSPCPIKVHVHARKFFPEASNDSVSVWEDESVLFDVLSNDYVSDGQINLIEYSKPLHGSLLQFGKLFRYTPFKGYFGNDSFSYNITESNNNVAIGVAFISVLCKPPQFISLPLRLNVTEDVLSPQFGGFPGFEIRYSNKEDNVTLTISAKFGSVYLAPGWIGFPDSLGDMLSIKRGGRTGKDLILAGSVDVMNSALQLIQYLSNDNFYGEDTISLYTTNKNGVQDSHVPVFVKPVNDPPKINVPKFIVLEGYETGDGFQIFDKERDVFNFSITDSDIIHYPGNKSHLMVMFSVEVNDGILTTTLPVHLIKTAELKIKRSNQWQPLQTFVTIANHFITKGRGIRFQGTIGDCNYAMQRLFFQGANLDTLLTITVNDLGSYGCYLNCEEDIISFPLTTEAIVILMKRRLFNSTTAFLLGSAIIFEIATLFILGGLLMFFICKCMAELHTERNISDSYKNNAREELEDHTEKIDNMPNQDTVNFNEKLALGSPRVPSLPIPLSLSKRHSNFRRRSRRKLKMDEIQKGDMLLTYASFGGDYCASNPSRIEMQNWRRSD

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.780
SRP064423	SRR2545915	Juvenile tuber	3.210
SRP108465	SRR5643513	five period of Gastrodia elata	2.450
	SRR5643514	five period of Gastrodia elata	2.250
	SRR5643515	five period of Gastrodia elata	1.790
	SRR5643524	five period of Gastrodia elata	1.880
	SRR5643525	five period of Gastrodia elata	3.050
	SRR5643528	five period of Gastrodia elata	2.350
	SRR5643658	five period of Gastrodia elata	2.540
	SRR5643659	five period of Gastrodia elata	1.480
	SRR5643660	five period of Gastrodia elata	1.920
	SRR5643661	five period of Gastrodia elata	1.390
	SRR5643662	five period of Gastrodia elata	1.340
	SRR5643663	five period of Gastrodia elata	1.040
	SRR5643664	five period of Gastrodia elata	0.830
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.080
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.340
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.380
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.450
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.550
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.560
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.150
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.570
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.950
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.980
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.790
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.790
SRP279888	Gastro	Gastrodia elata tuber	1.81
	Juven	Juvenile tuber	1.94
	Mother_Gastro	Mother tuber of Gastrodia elata	1.66
	Mother_Juven	Mother tuber of Juvenile	1.74