Detail information of GWHGAAEX005275/evm.TU.scaffold_16.255
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|311108868|ref|YP_003981721.1| | 3.00E-32 | phospholipase D [Achromobacter xylosoxidans A8] |
| KOG | KOG1329 | 0 | Phospholipase D1 |
| nr | gi|743855336|ref|XP_010941358.1| | 0 | PREDICTED: phospholipase D delta-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9C5Y0|PLDD1_ARATH | 0 | Phospholipase D delta |
| trEMBL | tr|M0U737|M0U737_MUSAM | 0 | Phospholipase D {ECO:0000256|PIRNR:PIRNR036470} |
| TAIR | AT4G35790 | 0 | phospholipase D delta |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000024 | 7748307 | 7772791 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005275
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00168.29 | C2 | 18 | 147 | 6.70E-25 |
| PF00614.21 | PLDc | 351 | 385 | 7.90E-06 |
| PF00614.21 | PLDc | 670 | 696 | 1.30E-06 |
| PF12357.7 | PLD_C | 743 | 816 | 5.30E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0046470 | Biological Process | phosphatidylcholine metabolic process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0004630 | Molecular Function | phospholipase D activity |
| GO:0005509 | Molecular Function | calcium ion binding |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.780 |
| SRR2545915 | Juvenile tuber | 5.890 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 22.230 |
| SRR5643514 | five period of Gastrodia elata | 20.080 | |
| SRR5643515 | five period of Gastrodia elata | 16.710 | |
| SRR5643524 | five period of Gastrodia elata | 21.030 | |
| SRR5643525 | five period of Gastrodia elata | 45.750 | |
| SRR5643528 | five period of Gastrodia elata | 38.900 | |
| SRR5643658 | five period of Gastrodia elata | 43.120 | |
| SRR5643659 | five period of Gastrodia elata | 18.010 | |
| SRR5643660 | five period of Gastrodia elata | 20.180 | |
| SRR5643661 | five period of Gastrodia elata | 22.070 | |
| SRR5643662 | five period of Gastrodia elata | 17.390 | |
| SRR5643663 | five period of Gastrodia elata | 17.810 | |
| SRR5643664 | five period of Gastrodia elata | 17.630 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 17.540 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 23.700 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.050 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.120 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.690 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.700 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.840 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.640 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 22.140 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.200 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 26.090 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 26.090 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 23.55 |
| Juven | Juvenile tuber | 22.64 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 28.75 | |
| Mother_Juven | Mother tuber of Juvenile | 33.24 |