Detail information of GWHGAAEX005277/evm.TU.scaffold_16.257


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG07000Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase
nrgi|743855320|ref|XP_010941349.1|0PREDICTED: probable protein phosphatase 2C 60 isoform X1 [Elaeis guineensis]
Swissprottr|Q5Z8P0|P2C60_ORYSJ0Probable protein phosphatase 2C 60
trEMBLtr|A0A067G7G1|A0A067G7G1_CITSI0Uncharacterized protein {ECO:0000313|EMBL:KDO71336.1}
TAIRAT3G513700Protein phosphatase 2C family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002477917647814062-
Transcript Sequence

Network for GWHGAAEX005277

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00481.20PP2C813261.40E-39
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0043169Molecular Functioncation binding
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms87.510
SRR2545915Juvenile tuber113.440
SRP108465SRR5643513five period of Gastrodia elata73.890
SRR5643514five period of Gastrodia elata92.140
SRR5643515five period of Gastrodia elata86.100
SRR5643524five period of Gastrodia elata88.540
SRR5643525five period of Gastrodia elata111.470
SRR5643528five period of Gastrodia elata84.910
SRR5643658five period of Gastrodia elata145.710
SRR5643659five period of Gastrodia elata147.980
SRR5643660five period of Gastrodia elata188.230
SRR5643661five period of Gastrodia elata139.020
SRR5643662five period of Gastrodia elata122.500
SRR5643663five period of Gastrodia elata105.540
SRR5643664five period of Gastrodia elata104.320
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_194.400
SRR6049655Rhizomagastrodiae_C368-T10_good_1103.380
SRR6049656Rhizomagastrodiae_C368-T07_good_195.390
SRR6049657Rhizomagastrodiae_C368-T07_good_193.620
SRR6049658Rhizomagastrodiae_C368-T04_good_176.050
SRR6049659Rhizomagastrodiae_C368-T04_good_185.390
SRR6049660Rhizomagastrodiae_C368-T01_good_190.750
SRR6049661Rhizomagastrodiae_C368-T04_good_194.410
SRR6049662Rhizomagastrodiae_C368-T01_good_189.750
SRR6049663Rhizomagastrodiae_C368-T01_good_184.580
SRR6049664Rhizomagastrodiae_C368-T10_good_183.220
SRR6049665Rhizomagastrodiae_C368-T10_good_183.220
SRP279888GastroGastrodia elata tuber 93.28
JuvenJuvenile tuber77.65
Mother_GastroMother tuber of Gastrodia elata 71.26
Mother_JuvenMother tuber of Juvenile 49.82