Detail information of GWHGAAEX005284/evm.TU.scaffold_16.269


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|307152491|ref|YP_003887875.1|8.00E-12WD40 repeat-containing protein [Cyanothece sp. PCC 7822]
KOGKOG13349.00E-131WD40 repeat protein
nrgi|672172144|ref|XP_008806156.1|0PREDICTED: DDB1- and CUL4-associated factor 8 isoform X1 [Phoenix dactylifera]
Swissprottr|Q3Y8L7|DAW1_CHLRE2.00E-07Dynein assembly factor with WDR repeat domains 1
trEMBLtr|B9S5H1|B9S5H1_RICCO0WD-repeat protein, putative {ECO:0000313|EMBL:EEF41096.1}
TAIRAT4G384809.00E-131Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002482710018294531+
Transcript Sequence

Network for GWHGAAEX005284

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.31WD4051835.70E-05
PF00400.31WD403203570.038
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms19.180
SRR2545915Juvenile tuber12.610
SRP108465SRR5643513five period of Gastrodia elata14.160
SRR5643514five period of Gastrodia elata14.220
SRR5643515five period of Gastrodia elata13.660
SRR5643524five period of Gastrodia elata14.900
SRR5643525five period of Gastrodia elata16.960
SRR5643528five period of Gastrodia elata13.640
SRR5643658five period of Gastrodia elata13.190
SRR5643659five period of Gastrodia elata11.970
SRR5643660five period of Gastrodia elata12.650
SRR5643661five period of Gastrodia elata14.210
SRR5643662five period of Gastrodia elata13.450
SRR5643663five period of Gastrodia elata13.580
SRR5643664five period of Gastrodia elata14.800
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_116.320
SRR6049655Rhizomagastrodiae_C368-T10_good_112.730
SRR6049656Rhizomagastrodiae_C368-T07_good_116.410
SRR6049657Rhizomagastrodiae_C368-T07_good_116.680
SRR6049658Rhizomagastrodiae_C368-T04_good_119.070
SRR6049659Rhizomagastrodiae_C368-T04_good_119.840
SRR6049660Rhizomagastrodiae_C368-T01_good_117.530
SRR6049661Rhizomagastrodiae_C368-T04_good_118.890
SRR6049662Rhizomagastrodiae_C368-T01_good_116.380
SRR6049663Rhizomagastrodiae_C368-T01_good_118.890
SRR6049664Rhizomagastrodiae_C368-T10_good_116.150
SRR6049665Rhizomagastrodiae_C368-T10_good_116.150
SRP279888GastroGastrodia elata tuber 19.54
JuvenJuvenile tuber17.76
Mother_GastroMother tuber of Gastrodia elata 22.41
Mother_JuvenMother tuber of Juvenile 25.07