Gene detail

Detail information of GWHGAAEX005306/evm.TU.scaffold_161.2

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|720065792\|ref\|XP_010276375.1\|	PREDICTED: uncharacterized protein LOC104611142 [Nelumbo nucifera]
trEMBL	tr\|M0TBB1\|M0TBB1_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P29660_001}
TAIR	AT1G55360	Protein of Unknown Function (DUF239)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000166	77762	85954	+

Transcript Sequence
>GWHTAAEX005306 ATTAATTTCCTTCTTTGCAACAAAAGAACTGATCTTTTTAGCGCTGGAGAGGTAGGCGGCCTATGAGGGCTGCGGCACTGCTCATCTTCCTAGGCTTATGGCTCGCCGGAGCACCGCCGTCCATCGCCGGAGTACCGACGTCCTTCGCCAGGGGCATAAGGCTGGCCGCAAGGAAACACCTTAGAAGACTCAACAAGCCCTCCTTGAAGACCATTCAGAGTCCAGATGGAGATATTATAGATTGTGTGCACATTGCTCATCAGCCAGCATTTGATCATCCTTTCCTTAGAAATCACACAATTCAGCTGAGGCCTTCCTTCCATCCTGAACGCTTTTATGATGAGAAAAAGACAGAATCAGAGGATGAGAACAAGAGCCCAAATACTGTGGCTCAGCTCTGGCATCGGGCTGGGAGGTGCCCTGAGGGCACAATACCCATAAGGAGAACAAGGACAGAGGATATCCTTAGAGCAAGCTCAGTGAAAAGATATGGAAGAAAGAGGCGAAGGAGCATTCCAATGCCTCTGTTTGCAAACCCTGATATAATCAATGAGAGTGGTCATCAGCATGCAATTGTCTATGTAAATGGGGATAAGTTTTATGGAGCAAAGGCAATGATAAATGTCTGGGAACCAAATATTCAATTGCCAAATGAGTTCAGCCTCTCCCAACTTTGGATCTTGGGTGGTTCCTTTGGTCAAGATCTCAATAGTATTGAAGCAGGCTGGCTGGTAAGTCCTGAACTGTATGGAGATAACAATACTAGGTTGTTCACTTACTGGACTAGTGATTCTTATCAAGCAACTGGCTGCTACAACTTATTATGCTCTGGTTTCATTCAGATCAACAGTGAGATAGCAATGGGGGCAAGCATCTATCCTGTATCTGAGTATGGTGGCTCACAATATGATATTAGCATACTTATCTGGAAGGATCCAGTGGAAGGAAACTGGTGGATGCAATTTGGAAGAGATTATGTAATGGGCTATTGGCCTTCCTTCCTCTTCTCTTATTTAGCTGAGAGTGCATCCATGGTTGAATGGGGAGGGGAGATTATTAACTCTGAGCCAGATGGGCATCACACTTCCACTCACATGGGCAGTGGGCACTTCCCTGAAGAAGGCTTTGGCAAAGCAAGTTACTTCAAGAAAATACAGACAGTTGATGAATCCAATAACCTGAGGTCCCCCAAATGGACCAATACCTTCACTGAACAATCAAGTTGCTATGATGTTCAGTATGACAATAATGATGAATGGGGCAGCTTTTTTTACTTCGGTGGTCCTGGTAGAAACCCCAATTGCCAGTAGATAATCCATTATTATAAGCATTGCTCTACTTTTTATCTTTCTTTTTTGAATATGATGACATACATTTCTCATCATGGGCTCAAATTCGAAATGATCCTCCGACTCTGTCACCCTTCTGGCTATAAACCCCGTGGGGCTCAAAACTAGTTCACTCGCTGAAACGGAACCCGTTTCTTCAAAAATCTCTCGCAACGGTTTGATCGCAGCGCCCGTAAATGCACTAAGTTGTAAATGCACAAGCTTGGCAGGTTCTTCAACACCTTGGAGAGTATGGGATCAGAGTGCGCGAGTCGGAAGATCATTTCGGGATTTATTTTATGATTGATTGATTCTTCATGCAAGTGACTGTAATGAAGGGTTAGCTTGCTTTTTGCTTATTTTTTTCACTTGAGTTATTGTGTAATATGTTCAGATTTTCTGGTGTTCAATGAAATTTTGGCATCTTTGCATTTGGCAGAGGAACTATTAGGTAAGTTTACACAGGTCCTTAAATGTTTTCATTAATTGCGAGCAGGTGAATTTGTTATATATGATTATAAAAGGCTTTGCATGTG

Network for GWHGAAEX005306

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14365.5	Neprosin_AP	50	173	3.30E-45
PF03080.14	Neprosin	186	408	3.70E-85

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.950
SRP064423	SRR2545915	Juvenile tuber	0.890
SRP108465	SRR5643513	five period of Gastrodia elata	2.600
	SRR5643514	five period of Gastrodia elata	5.000
	SRR5643515	five period of Gastrodia elata	2.190
	SRR5643524	five period of Gastrodia elata	2.900
	SRR5643525	five period of Gastrodia elata	15.570
	SRR5643528	five period of Gastrodia elata	9.120
	SRR5643658	five period of Gastrodia elata	7.800
	SRR5643659	five period of Gastrodia elata	1.080
	SRR5643660	five period of Gastrodia elata	1.030
	SRR5643661	five period of Gastrodia elata	0.580
	SRR5643662	five period of Gastrodia elata	1.930
	SRR5643663	five period of Gastrodia elata	1.740
	SRR5643664	five period of Gastrodia elata	1.870
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.800
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.260
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.780
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.970
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.050
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.220
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.520
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.270
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.780
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.320
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.120
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.120
SRP279888	Gastro	Gastrodia elata tuber	2.45
	Juven	Juvenile tuber	1.15
	Mother_Gastro	Mother tuber of Gastrodia elata	2.31
	Mother_Juven	Mother tuber of Juvenile	1.63