Detail information of GWHGAAEX005309/evm.TU.scaffold_161.5


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG13760Alpha tubulin
nrgi|255582570|ref|XP_002532068.1|0tubulin alpha chain, putative [Ricinus communis]
Swissprottr|O22349|TBA3_ELEIN0Tubulin alpha-3 chain
trEMBLtr|B9T1E6|B9T1E6_RICCO0Tubulin alpha chain, putative {ECO:0000313|EMBL:EEF30323.1}
TAIRAT5G197800tubulin alpha-5

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000166199233203462+
Transcript Sequence

Network for GWHGAAEX005309

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00091.24Tubulin32134.90E-67
PF03953.16Tubulin_C2633912.50E-50
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07374TUBA Phagosome map04145
Apoptosismap04210
Tight junctionmap04530
Gap junctionmap04540

Gene Ontology

GO term OntologyName
GO:0007017Biological Processmicrotubule-based process
GO:0005525Molecular FunctionGTP binding
GO:0005200Molecular Functionstructural constituent of cytoskeleton
GO:0003924Molecular FunctionGTPase activity
GO:0005874Cellular Componentmicrotubule

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms146.340
SRR2545915Juvenile tuber192.700
SRP108465SRR5643513five period of Gastrodia elata201.630
SRR5643514five period of Gastrodia elata158.960
SRR5643515five period of Gastrodia elata224.380
SRR5643524five period of Gastrodia elata139.360
SRR5643525five period of Gastrodia elata104.790
SRR5643528five period of Gastrodia elata112.990
SRR5643658five period of Gastrodia elata121.610
SRR5643659five period of Gastrodia elata350.780
SRR5643660five period of Gastrodia elata318.550
SRR5643661five period of Gastrodia elata320.830
SRR5643662five period of Gastrodia elata348.280
SRR5643663five period of Gastrodia elata354.520
SRR5643664five period of Gastrodia elata321.760
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1273.160
SRR6049655Rhizomagastrodiae_C368-T10_good_1311.450
SRR6049656Rhizomagastrodiae_C368-T07_good_1282.440
SRR6049657Rhizomagastrodiae_C368-T07_good_1238.040
SRR6049658Rhizomagastrodiae_C368-T04_good_1194.020
SRR6049659Rhizomagastrodiae_C368-T04_good_1149.300
SRR6049660Rhizomagastrodiae_C368-T01_good_1205.770
SRR6049661Rhizomagastrodiae_C368-T04_good_1252.050
SRR6049662Rhizomagastrodiae_C368-T01_good_1293.990
SRR6049663Rhizomagastrodiae_C368-T01_good_1220.020
SRR6049664Rhizomagastrodiae_C368-T10_good_1311.480
SRR6049665Rhizomagastrodiae_C368-T10_good_1311.480
SRP279888GastroGastrodia elata tuber 321.50
JuvenJuvenile tuber183.35
Mother_GastroMother tuber of Gastrodia elata 129.90
Mother_JuvenMother tuber of Juvenile 103.62