Detail information of GWHGAAEX005310/evm.TU.scaffold_161.6
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|430745591|ref|YP_007204720.1| | 4.00E-40 | phosphopantothenoylcysteine synthetase/decarboxylase [Singulisphaera acidiphila DSM 18658] |
| KOG | KOG0672 | 4.00E-95 | Halotolerance protein HAL3 (contains flavoprotein domain) |
| nr | gi|695055615|ref|XP_009415996.1| | 1.56E-106 | PREDICTED: phosphopantothenoylcysteine decarboxylase-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q69K55|HAL3_ORYSJ | 1.00E-102 | Phosphopantothenoylcysteine decarboxylase |
| trEMBL | tr|M0TWR9|M0TWR9_MUSAM | 5.00E-107 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P02120_001} |
| TAIR | AT3G18030 | 4.00E-95 | HAL3-like protein A |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000166 | 204609 | 226716 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005310
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02441.18 | Flavoprotein | 14 | 187 | 6.20E-48 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01598 | PPCDC, coaC | Metabolic pathways | map01100 |
| Pantothenate and CoA biosynthesis | map00770 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 32.170 |
| SRR2545915 | Juvenile tuber | 26.940 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 24.990 |
| SRR5643514 | five period of Gastrodia elata | 28.170 | |
| SRR5643515 | five period of Gastrodia elata | 27.470 | |
| SRR5643524 | five period of Gastrodia elata | 27.320 | |
| SRR5643525 | five period of Gastrodia elata | 42.070 | |
| SRR5643528 | five period of Gastrodia elata | 31.430 | |
| SRR5643658 | five period of Gastrodia elata | 37.640 | |
| SRR5643659 | five period of Gastrodia elata | 21.630 | |
| SRR5643660 | five period of Gastrodia elata | 23.930 | |
| SRR5643661 | five period of Gastrodia elata | 23.460 | |
| SRR5643662 | five period of Gastrodia elata | 26.460 | |
| SRR5643663 | five period of Gastrodia elata | 25.710 | |
| SRR5643664 | five period of Gastrodia elata | 26.110 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 23.150 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 32.770 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 25.410 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 27.500 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 20.660 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 30.030 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 30.380 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 24.440 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.100 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 23.040 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.930 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.930 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 25.16 |
| Juven | Juvenile tuber | 23.89 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 31.88 | |
| Mother_Juven | Mother tuber of Juvenile | 19.69 |