Gene detail

Detail information of GWHGAAEX005311/evm.TU.scaffold_161.9

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2171	0	Karyopherin (importin) beta 3
nr	gi\|672186456\|ref\|XP_008813087.1\|	0	PREDICTED: importin-5 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q8H0U4\|TNPO1_ARATH	4.00E-12	Transportin-1
trEMBL	tr\|V7CQ95\|V7CQ95_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW31425.1}
TAIR	AT5G19820	0	ARM repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000166	258074	271089	-

Transcript Sequence
>GWHTAAEX005311 CTTCATTTCGTAAAAGCACCAGAGAAAGAGCCACCTAAATCGCACTTTTTGTTTTTGTGCTTTTCCGTAGAGCCACGTAAGCGAGTCACGAAAGGACCCAACTTTCTGGGTTTAATTAAACAAAGCATCTATAAGCTCTTTTAACAGCTAATTACAGCACCGTCAGCTAATAATACAAACCCAAAATACCCCACGAAAACACATCGGCGGCCCGTTTTCATCCCACAATCTCGACGCCCTCACCATCCCTCCCACAAACCCTAAATATTTGATTAGATTCTCTAGAGAGGGAAGAAGTGAGTGAGGCGGCGGGACAGATCCTCTGCTATTTTTCTCGCCTCCTTTCTCGAATTCTCAGGTTCTCACCCACGCCGTTTAAGCGACTCTCGATCGATCCTGATTCAGGAAACCCTAGGGATGGATCAACAGGTTGCTATTGTGCTCGGCACCGATCCTGCGGCGTTCGATGCGCTGATTTCGCAATTGATGTCGTCTGCGAACGAGCAGCGGTCGCAGGCGGAAGCGATTTTCAACCTGTGCCGAGAACTCCACCCAGACGCTCTCGCTCTTAAGCTTGCTCATGGCTTGCACTCGTCCCAATCTCTCGAGATCCGCGCCATGTCCGCCGTCCTTCTCCGTAAGCAAGTTACCTCTTCCTCGTCCGGCGGCGAGTTGGAGGAATCGCCGTCTTACATCTGGTCGCGTCTCACCCCCGCCACGAAATCCTCCATTAAATCGCTCCTCCTCTCCGCTGTCCAGAGAGAAGAGACGAAGAGTATCGCCAAGAAGCTTTGTGATACCGTCTCCGAGCTTGCTTCCATTCTCCTTCCCGAGGATGCATGGCCGGAGCTCCTGCCTTTCATGTTCCAGGCGGTGACTTCCGATTCTCCGCGCCTTCAGGAGTTCGCCTTACTTATCTTCTCCCAGCTCGCCCAATATATCGGCGACATACTCCTCCCTCACCTTCCCACTCTTCATTCGGTCTTTCTCAATTCGTTATCTCATTCTATGTCTCCGGATGTTCGCATCGCCGCACTCGGCGCATCTATCAATTTTGTTCAGTGTCTCGAGTCTACGGTTGACCGCGAGCGGTTTCAGGACCTTCTTCCCGCCATGATGAGAACACTTACAGAGGCGCTCAATTCTGGAAATGAGGCCACCGCCCAGGAGGCTCTTGAGCTCCTTATTGAGCTTGCAGGCACTGAGCCTCGGTTTCTCAGGCGCCAGCTTGCTGACGTTGTTGGTTCTATGCTTCAGATAGCCGAAGCTGATCGCCTAGAGGAAGGGACCAGGCATCTTGCTGTTGAATTTGTGATTACTCTAGCTGAAGCCCGTGAACGTGCCCCAGGGATGATGAGAAGGCTTCCCCAGTTCATTGGGAGTCTCTTTGCTGTGCTAATGAAAATGTTGCTTGACATTGAGGATGAGCCTGCTTGGCACGGGGCTGAAAATGAGGATGAAGATGCTGGAGAGACCAGCAACTACAGTGTTGGGCAAGAATGTCTAGATCGGCTGTCTATTGCGTTGGGAGGGAACACTATTGTTCCAGTTGCCTCGGAGTTGCTTCCGCAGTATTTGGCAGCCCCAGAATGGCAGAAGCGCCATGCTGCTTTAATTACTCTTGCACAGATTGCAGAAGGGTGTGCGAAGGTCATGATTAAGAATTTGGAACAAGTTGTTTCCATGGTCCTAAACTCATTTCGAGATCCTCATCCTCGTGTTCGCTGGGCAGCAATAAATGCTATTGGGCAGTTATCCACTGATTTGGGTCCTGATCTTCAGGTTCATTATCATCAGCAAGTGTTACCCGCTCTGGCCTCTGCTATGGATGATTTTCAGAATCCCCGCGTGCAGGCACATGCCGCTTCTGCTGTTCTCAATTTCACAGAAAACTGCACTCCAGATACTTTGTCACCTTACTTAGACGGAATTGTTAGCAAATTACTTGTTCTGCTTCAGAATGGGAAGCAGATGGTGCAAGAAGGAGCTTTAACAGCTTTAGCATCAGTTGCTGATTCATCCCAAGAGCACTTCCAGAAATATTATGATGCTGTTATGCCATATTTGAAAGCTATTTTGATGAATGCGACTGACAAGTCAAATAGAATGCTGCGTGCTAAATCCATGGAGTGCATCAGTCTGGTTGGAATGGCTGTGGGCAAGGACAAATTTAGGGATGATGCTAAACAGGTTATGGAGGTTCTGATGACTTTGCAAGGGTCACAGTTGGAAAATGACGATCCTATAACAAGTTACATGCTTCAAGCATGGGCCAGGCTCTGCAAGTGCCTTGGTCAAGATTTTCTTCCATACATGAATGTTGTCATGCCTCCATTGCTCAAGTCTGCTCAATTAAAACCAGATGTAACCATTACATCTGCTGACACAGATGAGGAAATTGATGATTCAGATGATGACAGCATTGAGACGATCACTCTTGGAGATAAAAGAATCGGCATCAGGACTAGTGTCTTGGAGGAAAAGGCTACAGCTTGCAACATGCTGTGTTGTTATGCTGATGAACTCAAGGAGGGTTTCTTTCCTTGGATTGATCAGGTTGCTCCCACATTGGTGCCCCTTCTCAAATTTTATTTTCACGAAGAAGTGCGGAAAGCTGCTGTTTCAGCTATGCCAGAGCTTCTAAGATCAGCAAAGTTAGCTGTGGAGAAGGGACAGGCTTCTGGTCGTGATGAGTCATATGTAAAGCAGCTACTGCATTACATTTTTCCAGGTTTAGTGGAAGCTCTTCACAAGGAACCTGAGGTTGAAATATGTGCAACTATGCTGGATTCATTGAATGAATGTGTAGAGCTTGCTGGGCTGCTACTCAATGAGGTCCAGGTCCGATCCATTGTGGATGAACTGAAGCATGTTATAACGGCAAGCACCACAAGGAAGAGGGAAAGAGCTGAGAGGACCAAAGCAGAAGACTTTGATGCTGATGAGGGGGATCTTCTTAAAGAAGAAAATGAACAAGAAGAGGAAGTTTTTAATCAGGTTGGTGACTGTTTGGGCACCTTGATCAAAACCTTTAAAGTCTCTTTCCTGCCGTTCTTTGATGAGCTTTCAATTTATGTCACTGCAATGCTGGGCAAAGATAAAACCCCCGAGGAAAGAAGAATTGCCATTTGCATATTTGATGATGTTGCCGAACAATGTCAGGAAGCAGCCCTCAAATACTATGACACCTATTTACCGTTCTTACTGGAAGCCTGCAACGATGAAAATTCAGACGTTAGACAGGCCGCAGTTTATGGCGTTGGCGTCTGTGCTGAGTTTGGTGGCTCCGTTTTTAGACCTCTTGTTGGAGAAGCTCTCTCTCGTCTAAACAATGTAATAAGGCATCCCAACGCTCAGCATTCAGACAATATAATGGCCTATGACAACGCTGTTTCAGCCCTGGGTAAAATTTGCCAATTCCATCGGGATAGTATTGATGCAGCACAGATTGTTCCTTCTTGGTTGAGCTATCTACCGATCAAAGGTGATCTTATTGAAGCTAAGATAGTGCATGAGCAGCTTTGTCTGATGGTGGAAAGGTCGGATAGGGAGCTCCTGGGCCCTAACAATCAATATCTGCCTAAAATCGTTTCCGTTTTTGCCGAGGTTCTATGTGCGGGGAAGGATTTGGCGACGGAGCAGACGGTGGGCAGAATGGTGAATTTGCTGAGGCAGCTGCAGCAGACGCTCCCGCCGTCGGTTCTTGCTTCAGCCTGGTCTGCCTTGCATCCGCAGCAGCAGCTCGCTTTGCAGTCCGTCCTTTCCACGTGATTGATCTTCCTTTTTATTCAGAGGCAGCAGTTCGGAGGGCAGGAGGGGGTCTCTTTGGTTGCATCATCATGCATTTCATCATCATATGTCGTCATCCGGTCTGCCATACTTTCTTTCTTTCTTTTGTGCATGGATTGCTGATGCAATCATCATCATCTTTATCATGTTTTGTTTATTTTCAAATTTCTCCTCTCGTTAGAGAGAAAGTGAGAAGGGGAGGGAGAAAACAGGAGTTAAGAGTGGGGCTTGTGTTGTACCATGTGCATAAAAAAATAGTGGTTGGTGCACATTTATCTCTCCTTGCCTTTGTTTCCGTTCTCGAAACGAATGGGGGGTGGGGGGGCTTTATTTTTTTTCTTTCTATTGTCTATTTATATTGTATTTCGGTTGTTTGGTTGGGTCAAGGAGAAATATGAATGTATCAGGGATTTGAGTGAACTCGAGTTCCTGCAGCAGTTTTGCCTTTTTCTTCTTTGAAACATTTCAATGGGCCGTATTTTCTTCAATTTTTGAATTTTGAAGCTCATTTTTGAATTTGTTGCTTGTACCTTTATTATTATTGCTATTTCTATCAAGTCATTTTAAAACTATATTGTATTAGAATTAATGACAGTGATTATTGCTTCAAGGGATTTGAGCGAACTCAAGTTCCTTAGTGGTATATATATGTTAGAAAGTATGAGAGACAATGTCATAATGTTCTGCAAATTCAAAGAGTTTATGTTCATTTATT

Network for GWHGAAEX005311

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13646.5	HEAT_2	382	485	4.10E-10
PF02985.21	HEAT	926	953	4.30E-05

Protein Sequence

>GWHPAAEX005311
MDQQVAIVLGTDPAAFDALISQLMSSANEQRSQAEAIFNLCRELHPDALALKLAHGLHSSQSLEIRAMSAVLLRKQVTSSSSGGELEESPSYIWSRLTPATKSSIKSLLLSAVQREETKSIAKKLCDTVSELASILLPEDAWPELLPFMFQAVTSDSPRLQEFALLIFSQLAQYIGDILLPHLPTLHSVFLNSLSHSMSPDVRIAALGASINFVQCLESTVDRERFQDLLPAMMRTLTEALNSGNEATAQEALELLIELAGTEPRFLRRQLADVVGSMLQIAEADRLEEGTRHLAVEFVITLAEARERAPGMMRRLPQFIGSLFAVLMKMLLDIEDEPAWHGAENEDEDAGETSNYSVGQECLDRLSIALGGNTIVPVASELLPQYLAAPEWQKRHAALITLAQIAEGCAKVMIKNLEQVVSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQVHYHQQVLPALASAMDDFQNPRVQAHAASAVLNFTENCTPDTLSPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPYLKAILMNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMTLQGSQLENDDPITSYMLQAWARLCKCLGQDFLPYMNVVMPPLLKSAQLKPDVTITSADTDEEIDDSDDDSIETITLGDKRIGIRTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQASGRDESYVKQLLHYIFPGLVEALHKEPEVEICATMLDSLNECVELAGLLLNEVQVRSIVDELKHVITASTTRKRERAERTKAEDFDADEGDLLKEENEQEEEVFNQVGDCLGTLIKTFKVSFLPFFDELSIYVTAMLGKDKTPEERRIAICIFDDVAEQCQEAALKYYDTYLPFLLEACNDENSDVRQAAVYGVGVCAEFGGSVFRPLVGEALSRLNNVIRHPNAQHSDNIMAYDNAVSALGKICQFHRDSIDAAQIVPSWLSYLPIKGDLIEAKIVHEQLCLMVERSDRELLGPNNQYLPKIVSVFAEVLCAGKDLATEQTVGRMVNLLRQLQQTLPPSVLASAWSALHPQQQLALQSVLST

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	68.050
SRP064423	SRR2545915	Juvenile tuber	52.290
SRP108465	SRR5643513	five period of Gastrodia elata	52.050
	SRR5643514	five period of Gastrodia elata	47.300
	SRR5643515	five period of Gastrodia elata	45.970
	SRR5643524	five period of Gastrodia elata	45.100
	SRR5643525	five period of Gastrodia elata	59.140
	SRR5643528	five period of Gastrodia elata	54.950
	SRR5643658	five period of Gastrodia elata	58.660
	SRR5643659	five period of Gastrodia elata	72.530
	SRR5643660	five period of Gastrodia elata	75.510
	SRR5643661	five period of Gastrodia elata	76.080
	SRR5643662	five period of Gastrodia elata	71.150
	SRR5643663	five period of Gastrodia elata	65.280
	SRR5643664	five period of Gastrodia elata	74.800
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	72.610
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	67.290
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	63.550
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	74.310
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	69.750
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	73.030
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	71.730
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	66.920
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	53.280
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	54.850
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	56.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	56.000
SRP279888	Gastro	Gastrodia elata tuber	71.43
	Juven	Juvenile tuber	104.43
	Mother_Gastro	Mother tuber of Gastrodia elata	40.53
	Mother_Juven	Mother tuber of Juvenile	62.58