Detail information of GWHGAAEX005313/evm.TU.scaffold_161.11


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|154251906|ref|YP_001412730.1|7.00E-149succinyl-CoA synthetase subunit alpha [Parvibaculum lavamentivorans DS-1]
KOGKOG12550Succinyl-CoA synthetase, alpha subunit
nrgi|743759928|ref|XP_010934473.1|0PREDICTED: probable succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial [Elaeis guineensis]
Swissprottr|Q8GTQ9|SUCA1_SOLLC0Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial (Precursor)
trEMBLtr|M1BCU6|M1BCU6_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400042326}
TAIRAT5G232500Succinyl-CoA ligase, alpha subunit

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000166277111291886-
Transcript Sequence

Network for GWHGAAEX005313

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02629.18CoA_binding451381.40E-31
PF00549.18Ligase_CoA1913121.30E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01899LSC1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
Citrate cycle (TCA cycle)map00020
Propanoate metabolismmap00640

Gene Ontology

GO term OntologyName
GO:0048037Molecular Functioncofactor binding
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms78.450
SRR2545915Juvenile tuber101.470
SRP108465SRR5643513five period of Gastrodia elata124.450
SRR5643514five period of Gastrodia elata152.960
SRR5643515five period of Gastrodia elata118.500
SRR5643524five period of Gastrodia elata141.150
SRR5643525five period of Gastrodia elata133.420
SRR5643528five period of Gastrodia elata149.200
SRR5643658five period of Gastrodia elata136.320
SRR5643659five period of Gastrodia elata108.270
SRR5643660five period of Gastrodia elata107.000
SRR5643661five period of Gastrodia elata109.950
SRR5643662five period of Gastrodia elata109.680
SRR5643663five period of Gastrodia elata102.780
SRR5643664five period of Gastrodia elata100.600
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1119.690
SRR6049655Rhizomagastrodiae_C368-T10_good_1111.590
SRR6049656Rhizomagastrodiae_C368-T07_good_1132.790
SRR6049657Rhizomagastrodiae_C368-T07_good_199.190
SRR6049658Rhizomagastrodiae_C368-T04_good_1111.210
SRR6049659Rhizomagastrodiae_C368-T04_good_1108.790
SRR6049660Rhizomagastrodiae_C368-T01_good_1107.520
SRR6049661Rhizomagastrodiae_C368-T04_good_1109.820
SRR6049662Rhizomagastrodiae_C368-T01_good_1151.980
SRR6049663Rhizomagastrodiae_C368-T01_good_1136.890
SRR6049664Rhizomagastrodiae_C368-T10_good_1164.690
SRR6049665Rhizomagastrodiae_C368-T10_good_1164.690
SRP279888GastroGastrodia elata tuber 174.18
JuvenJuvenile tuber157.55
Mother_GastroMother tuber of Gastrodia elata 184.35
Mother_JuvenMother tuber of Juvenile 197.55