Detail information of GWHGAAEX005314/evm.TU.scaffold_161.12


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|20094881|ref|NP_614728.1|9.00E-1530S ribosomal protein S28 [Methanopyrus kandleri AV19]
KOGKOG35023.00E-3140S ribosomal protein S28
nrgi|218192158|gb|EEC74585.1|1.08E-35hypothetical protein OsI_10164 [Oryza sativa Indica Group]
Swissprottr|P46302|RS28_MAIZE2.00E-3540S ribosomal protein S28
trEMBLtr|B8APC5|B8APC5_ORYSI4.00E-36Putative uncharacterized protein {ECO:0000313|EMBL:EEC74585.1}
TAIRAT5G038503.00E-31Nucleic acid-binding, OB-fold-like protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000166351009372802+
Transcript Sequence

Network for GWHGAAEX005314

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01200.17Ribosomal_S28e851457.60E-32
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02979RP-S28e, RPS28 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms19.030
SRR2545915Juvenile tuber18.170
SRP108465SRR5643513five period of Gastrodia elata6.410
SRR5643514five period of Gastrodia elata5.390
SRR5643515five period of Gastrodia elata2.380
SRR5643524five period of Gastrodia elata3.090
SRR5643525five period of Gastrodia elata1.480
SRR5643528five period of Gastrodia elata3.940
SRR5643658five period of Gastrodia elata3.720
SRR5643659five period of Gastrodia elata8.460
SRR5643660five period of Gastrodia elata8.550
SRR5643661five period of Gastrodia elata12.900
SRR5643662five period of Gastrodia elata7.900
SRR5643663five period of Gastrodia elata8.900
SRR5643664five period of Gastrodia elata6.090
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_15.710
SRR6049655Rhizomagastrodiae_C368-T10_good_15.730
SRR6049656Rhizomagastrodiae_C368-T07_good_116.550
SRR6049657Rhizomagastrodiae_C368-T07_good_114.510
SRR6049658Rhizomagastrodiae_C368-T04_good_116.620
SRR6049659Rhizomagastrodiae_C368-T04_good_110.320
SRR6049660Rhizomagastrodiae_C368-T01_good_115.340
SRR6049661Rhizomagastrodiae_C368-T04_good_115.250
SRR6049662Rhizomagastrodiae_C368-T01_good_123.550
SRR6049663Rhizomagastrodiae_C368-T01_good_118.900
SRR6049664Rhizomagastrodiae_C368-T10_good_111.960
SRR6049665Rhizomagastrodiae_C368-T10_good_111.960
SRP279888GastroGastrodia elata tuber 22.68
JuvenJuvenile tuber2.70
Mother_GastroMother tuber of Gastrodia elata 1.54
Mother_JuvenMother tuber of Juvenile 1.42