Detail information of GWHGAAEX005316/evm.TU.scaffold_161.14
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|317121746|ref|YP_004101749.1| | 4.00E-18 | P-type HAD superfamily ATPase [Thermaerobacter marianensis DSM 12885] |
| KOG | KOG0206 | 0 | P-type ATPase |
| nr | gi|672166969|ref|XP_008803426.1| | 0 | PREDICTED: phospholipid-transporting ATPase 3 [Phoenix dactylifera] |
| Swissprot | tr|Q9XIE6|ALA3_ARATH | 0 | Phospholipid-transporting ATPase 3 |
| trEMBL | tr|W9REU4|W9REU4_9ROSA | 0 | Phospholipid-transporting ATPase 3 {ECO:0000313|EMBL:EXB74722.1} |
| TAIR | AT1G59820 | 0 | aminophospholipid ATPase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000166 | 376852 | 447992 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005316
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16209.4 | PhoLip_ATPase_N | 56 | 120 | 1.60E-24 |
| PF00122.19 | E1-E2_ATPase | 150 | 387 | 1.10E-06 |
| PF13246.5 | Cation_ATPase | 532 | 624 | 1.30E-10 |
| PF16212.4 | PhoLip_ATPase_C | 891 | 1141 | 2.30E-84 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0015914 | Biological Process | phospholipid transport |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0000287 | Molecular Function | magnesium ion binding |
| GO:0140326 | Molecular Function | ATPase-coupled intramembrane lipid transporter activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 55.310 |
| SRR2545915 | Juvenile tuber | 34.210 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 23.500 |
| SRR5643514 | five period of Gastrodia elata | 21.940 | |
| SRR5643515 | five period of Gastrodia elata | 24.620 | |
| SRR5643524 | five period of Gastrodia elata | 22.770 | |
| SRR5643525 | five period of Gastrodia elata | 33.240 | |
| SRR5643528 | five period of Gastrodia elata | 33.380 | |
| SRR5643658 | five period of Gastrodia elata | 34.450 | |
| SRR5643659 | five period of Gastrodia elata | 23.660 | |
| SRR5643660 | five period of Gastrodia elata | 26.710 | |
| SRR5643661 | five period of Gastrodia elata | 21.900 | |
| SRR5643662 | five period of Gastrodia elata | 24.450 | |
| SRR5643663 | five period of Gastrodia elata | 23.320 | |
| SRR5643664 | five period of Gastrodia elata | 26.260 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 31.070 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 26.350 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 25.490 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 41.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 38.960 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 43.010 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 34.160 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 34.200 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 24.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 24.460 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 20.610 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 20.610 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 31.08 |
| Juven | Juvenile tuber | 41.22 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 38.67 | |
| Mother_Juven | Mother tuber of Juvenile | 59.81 |