Detail information of GWHGAAEX005318/evm.TU.scaffold_161.16


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG06200Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins
nrgi|743791087|ref|XP_010923332.1|0PREDICTED: carbon catabolite repressor protein 4 homolog 1-like isoform X1 [Elaeis guineensis]
Swissprottr|Q9M2F8|CCR4B_ARATH0Carbon catabolite repressor protein 4 homolog 2
trEMBLtr|Q338D5|Q338D5_ORYSJ0Os10g0412100 protein {ECO:0000313|EMBL:BAF26501.1}
TAIRAT3G585800DNAse I-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000166507625547883-
Transcript Sequence

Network for GWHGAAEX005318

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF15801.4zf-C6H2721101.70E-08
PF03372.22Exo_endo_phos2595925.70E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12603CNOT6, CCR4 RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms26.230
SRR2545915Juvenile tuber29.770
SRP108465SRR5643513five period of Gastrodia elata24.050
SRR5643514five period of Gastrodia elata24.900
SRR5643515five period of Gastrodia elata21.410
SRR5643524five period of Gastrodia elata25.080
SRR5643525five period of Gastrodia elata23.220
SRR5643528five period of Gastrodia elata22.190
SRR5643658five period of Gastrodia elata20.310
SRR5643659five period of Gastrodia elata20.720
SRR5643660five period of Gastrodia elata22.750
SRR5643661five period of Gastrodia elata20.750
SRR5643662five period of Gastrodia elata25.260
SRR5643663five period of Gastrodia elata21.980
SRR5643664five period of Gastrodia elata22.930
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_123.540
SRR6049655Rhizomagastrodiae_C368-T10_good_129.060
SRR6049656Rhizomagastrodiae_C368-T07_good_126.570
SRR6049657Rhizomagastrodiae_C368-T07_good_125.260
SRR6049658Rhizomagastrodiae_C368-T04_good_123.360
SRR6049659Rhizomagastrodiae_C368-T04_good_125.670
SRR6049660Rhizomagastrodiae_C368-T01_good_125.060
SRR6049661Rhizomagastrodiae_C368-T04_good_124.070
SRR6049662Rhizomagastrodiae_C368-T01_good_126.860
SRR6049663Rhizomagastrodiae_C368-T01_good_125.750
SRR6049664Rhizomagastrodiae_C368-T10_good_127.580
SRR6049665Rhizomagastrodiae_C368-T10_good_127.580
SRP279888GastroGastrodia elata tuber 27.02
JuvenJuvenile tuber30.57
Mother_GastroMother tuber of Gastrodia elata 37.61
Mother_JuvenMother tuber of Juvenile 40.37