Gene detail

Detail information of GWHGAAEX005325/evm.TU.scaffold_161.24

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0859	2.00E-131	Synaptobrevin/VAMP-like protein
nr	gi\|697159792\|ref\|XP_009588661.1\|	8.13E-145	PREDICTED: vesicle-associated membrane protein 721 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9MAS5\|VA726_ARATH	6.00E-132	Putative vesicle-associated membrane protein 726
trEMBL	tr\|W9S386\|W9S386_9ROSA	2.00E-142	Putative vesicle-associated membrane protein 726 {ECO:0000313\|EMBL:EXC24180.1}
TAIR	AT1G04760	2.00E-131	vesicle-associated membrane protein 726

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000166	679841	703617	-

Transcript Sequence
>GWHTAAEX005325 CCGGTCATGCGTGCCGGTCAAAACGGGAAAAGCTAATCACTTTCAGGCATGCTTCGCCGAAGGCTCTATGCGGCTTTTGAACTTTCTTCAAAAGTAAAAGCACAATCTCTATCCAATTCCAGCATCCTGTCTTTTTTCTCTTCCTCTGTATAGTGTCTGCTGTGACCCGTTGTTAAATCTGCGTTTGGCGCTTTTGTTGCCTAGGGTTTTCGTCAGAGATGGGGCAGCAGTCGCTGATCTACAGCTTCGTGGCACGGGGAACGGTGATTTTGGCAGAGTATACGGACTTCTCTGGTAACTTCACGAGTATCGCCTTTCAGTGCCTTCAAAAACTCCCAGCAAGCAACAACAAGTTCACCTATAACTGTGACAACCATACCTTCAATTACCTTGTCGAAGATGGATACACTTATTGTGTTGTCGCGGTAGAAACAGTGGGGAGACAGATTCCCATCGCATTCTTGGAGCGAATCAAAGAAGATTTTGGGAAGCGATATGGAGGTGGTAAAGCTGCAACTGCTGTTGCCAGCAGCCTCAACCGTGAATTTGGGCCAAAACTGAAGGAGCAAATGCAGTACTGCATCGACCATCCTGAGGAAATCAGCAAGCTCGCCAAGGTGAAAGCTCAGGTCACCGAAGTCAAAGGTGTCATGATGGAAAACATAGAAAAGGTTCTTGATCGAGGCGAGAAGATCGAGCTCCTCGTTGTCCAGTCAGAAAACCTTCGTTCACAGGCGCAAGATTTCAGGCAGCAGGGAACTACTATGAGGAGAAAAATGTGGTTCCAGAACATGAAGGTGAAGCTGATCGTGCTGGCTATTATAATAGCCCTAATTCTCATCATTATTCTCTCTGTATGCCATGGATTCAAATGCTAAAGATTTCTTAAGCTCGAGCCTATCGGAGAAAAGATATAAAAGGAAAAAGGCCGACTTGCTCTTCCAGGTCCGCTCCTGAATTGGCCTCGTAATTTTCTTCGATGATTTGCCGTGGCGTGTCATGTTTATTTTGTGATTTTCAGGGGTAGCAATCCCCAATAGCTGGTTCTGCTTTTGTATAGATATAGTTGATATGTATAGCCCTCACTGTATTTGTGAAGATTCTTCCTTGCTTTTATGCTGTAGTGTATGAAGACTGGTTGGTGTCTGATTGATTTCTTACAGTTTTAATACTATATCCTGAATTCCTCACCTATATATAGCTAACCAGAGCCAATTTCTAGTCTTTTATTTCAATAAATAATACACAACATTCACTGGTCAAACATAGAAAATAGCATCATTTGAAAAACTCTTTTTATTTGAGATCCACTTAGCATCAACAAAGCATTAACTACTTAATCATGCTTCTGGTTTTGGTTTTGTTCTTGGGGACTGTGCCGTCGTTCTTGGCGAGAGCCATGTACTTGTCCTTCCTAGTATGATCGGTGCACTGAAAGCAGAGGGTGGCTGCGATGATCCTCTGCACGTAGTTGGCGACCTCAAAGCTGGTCTTCCCGCCTGCGCAGGTCATCTCCCTGGGAAGCCTTCCCAGGAAGGTGATGTGGTAGGCGGGGACGGGGTTCATGAAGAAGTAAAAGGGATCCATCCACTTCCACCCCCTCGCCGTGGTGCCGTGGAACATGCTCGTCCTGCTCTCCGCCGCCACCGGAACGATCTCGTTCGCAAGCTCCGCAAACAGAGCCGAGAAGCGCAGCAGGTAAGGCTCTCGGCAGGTCGTGCCTTCCGGGCATATGACGACGTCGTCCTCGCGGAGCAGCTGGCAGATGGCGCTTGCGTCGTCGGATCTGTTTCGGGTGAGACGGATGGTGCGGATTGGAGAGATGAGCTCAGAGAAGGGCGAGAGGGAATAGGTGACTGTAGAAATGGGGCGGCCAAGGGCCACGGAGATGATGAAGGGGTCCAGAAGGGTGCGGTGGGACGAAATGTAGAGGCTGCCTTTCTTGCAGGAGGAGACTGGGGGAGGGGAGCCGCTGACGCTCAGGCGGATGCCTAGGAGGCGGAAGTAGTATGGGGCGAGGCGGATGGGGAGGAGGGATGAGGCTGCCACGCGTACGCAGGAGAGGAGGAAGCCTGCCGGGAGCCAGAGGAGGGTCAGGAGGGAGACCAACACCGTCGGCCTTTGCACCAGCCGCCCATCATGGAAGATCACGGGCTTTGGCTGGGCCTGCTCCCCTTCCGCTTCGTCTGTCCTGACGTTGGTGCTCCCTGGCCGCACGATATACGCTGCCTGTGATCAAGGGTAAAATATTATTTTGGGCGACGTGTTTTGCGTCGGCCGTTGTGAAGGAAAGCTTAATTCATAAGAGAGAGAGCTGCTGCAGACGACCAAAACGCAAGTACGTAAAAAAAAAAATTTAATTGGCAAATGAATCAATAAATTTATTTTTTCTGATGTAAGTAGCAAATTATATTATTCGCGGAGCTAAGAAAGGGTTTCCAAAAGGCAAAAACCCAAAGCATAATATATTGGAAAATACTAGTTACACAATAATATACATTAAAAAGTATTTATGATCAATT

Network for GWHGAAEX005325

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13774.5	Longin	34	111	5.80E-22
PF00957.20	Synaptobrevin	129	215	9.10E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016192	Biological Process	vesicle-mediated transport
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	50.510
SRP064423	SRR2545915	Juvenile tuber	42.840
SRP108465	SRR5643513	five period of Gastrodia elata	46.670
	SRR5643514	five period of Gastrodia elata	51.440
	SRR5643515	five period of Gastrodia elata	56.490
	SRR5643524	five period of Gastrodia elata	51.280
	SRR5643525	five period of Gastrodia elata	133.490
	SRR5643528	five period of Gastrodia elata	97.190
	SRR5643658	five period of Gastrodia elata	116.360
	SRR5643659	five period of Gastrodia elata	49.410
	SRR5643660	five period of Gastrodia elata	53.000
	SRR5643661	five period of Gastrodia elata	52.870
	SRR5643662	five period of Gastrodia elata	59.120
	SRR5643663	five period of Gastrodia elata	50.840
	SRR5643664	five period of Gastrodia elata	65.920
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	40.510
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	46.990
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	40.020
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	44.740
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	56.010
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	60.820
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	45.150
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	44.630
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	37.920
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	42.420
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	49.560
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	49.560
SRP279888	Gastro	Gastrodia elata tuber	64.74
	Juven	Juvenile tuber	47.40
	Mother_Gastro	Mother tuber of Gastrodia elata	95.28
	Mother_Juven	Mother tuber of Juvenile	80.69