Gene detail

Detail information of GWHGAAEX005335/evm.TU.scaffold_161.35

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1267	7.00E-112	Mitochondrial transcription termination factor, mTERF
nr	gi\|672206911\|ref\|XP_008779561.1\|	0	PREDICTED: uncharacterized protein LOC103699304 [Phoenix dactylifera]
trEMBL	tr\|Q8H405\|Q8H405_ORYSJ	6.00E-143	Putative uncharacterized protein P0492E07.119 {ECO:0000313\|EMBL:BAC20725.1}
TAIR	AT3G60400	7.00E-112	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000166	953915	956588	+

Transcript Sequence
>GWHTAAEX005335 CAAATCTAAGCGCGAACTATACTTCCAAATTCTCAAAACCCTAGCGCCAGTTATACCCAGCTCGCCGGCGGCAACGCCCTATGGGCTTCCTCTTCCAATACGCCTCCGCCGCCGGCTTCTTATCTCACCTCCTCCTCTCGCATCGCTTCCTTTCCTCCTCCTCAATCTCTTCCGCTCGTAGAAAGCTCAAACACCTCAGTCACCGCGCCCGCACCCGCGCCCTCGCCGAAGCCAAAATCGCGCTAACTGATTACCTTCACGCCACTCGCGGTCTCCCCTTTGGTATTGCCGATCACATTGTCTCTAATTCCCCCATATCCCTCTCCACCCTCGTTTCTCAAGCACCTTTACACAGCGCGGTTCCGCCTGAATTCCGCCGCATCATTGGCAGCTTCCTCGCTTACAGTCCCGTCAACGAGTTAGACTTTTTCTTCGAAAGCATCGGCGTTTCTCCATCTCACCATTCGCTCTCTTATTCCAATCAGCTTTTCCTTTCTGATGACCCCCGACTCCTTGCCTCCGTTTCGCCTTTGCTGCAGTTTGGCTTCCCGTGGTCTCTCCTCGGATCTCTTTACCTTGATTCTCCATCCATTTTGGCTTCTCCGCCGGGCCATCTCCTGGACCGCCTTCGGAGGTTCGAGGCCCTCGGGTTCAGTCGCGTCTGCGTCATTGCCATTTGCCTCACGTTCCCGTCTTCTCTTCTTTCTTCGGCGGAAGAAGCTGCGGAGACAGAGAGACTCTTTCGCGACCTCAAAATTGTGTTTTTGGACTACGGCCTTGAGGGTTGCGCAGGAGATGACTTGCAGGTGCTTCTTCGCTTCTGCAGGAGGATACGCTTGTTCTATGATATGGGTTCTGCAAAGGGGGGTATGGGGGACCTCATGGGCCGGAGCCGGAGGATTTTTGTAGAGTTTGAGGAGTCTGTTATTACTCGCAGGTTGAATTTTTTCTTGAAACTGGGGATGCGGAGGGAGGATGTCGGATCTTTTATTCTAAAAAATTCAGAAATTTTCGATTTTGGTCTTGAGGATTCGGAGATTGTGATTCCAGATTATCTAATCAGCGTTGGATTGAGCAAATCAAAAGCTGCTTCTCTCATGAAGAGGTGTCCGTTTGTGAAGGGGAAAAATAGATTAGTGAACTTGCCGGGAATAACGAGAGCTTTGGACATTGATAAGTGGTTTTTAACCAAAATTGTTGATGAGAAGAATATACACTTCCTCTCCCCTTCCTATGCATGTTCCGATTCATGCAAATGTGAATCAGAATCTGCTTTCATACAAAATTTAAAAAAATTGAAAATTGTAAAGATAAACAATTTTCTTGATGTTAAAGTGGAGTTTTTTCTTAGTATTGGATTTGCAAAAAATAAGGTGACATGCAAGACTCTTGGGCATATTCATGGCACAAAGGAGATGCTGCATGGGCGGTTTGATTGCCTTATTGGAATGGGAATTAAGTATGATATGCTCTGTAGAATGATAATAGCTTCACCTAAAGTGTTTAATCAGAGCGGAGACATACTTTGTAAGAAAGTGAATTACCTCTGTAAGAATTTGGGCTATCCTATTGAGTATCTTGCTAAATTTCCTGCCTTCTTGTCTTTTGATCTAGAGAACAGGATTAAACCCAGATATAATATTATAAATTGGCTCGGAGAGAATGGACTTGTAAAAAAGCATTATGCTCCTGCTACTGTTCTTGCTAACTCAGAGAAAAGGTTCATATTTATCCTTTCATGTATTCATCCAGCAGCTCCAAAGCAATGGCTTGAATGCTTTTCCTCTCATATTGACCACAATGATGATAAAGAGACCTGCTAGAAGATTCAATTCCTTTTCTTTTCCTAGAGTTCAAGAGGATTACTTGCTGTACATTGTTTACGAAGAGGTTAGCAGACCATTAATCCTGCAGAATGAATAAGTTAGTTTCCAAGTACTCAGAAGATGAAATTTGATCCATTTGATCCATTCAGTGCTTGTGGAGGATGTAACTTTCTGAATTTCATTGACTGGACAAAGAGATGTGACGGCAGTTATTGGGATCATCTAGTTAGAATGTACAATGAAAAAGCTCACTCTACACTTTCTGCAATGTGATAGTACTACTTAATTATGTAGTTAGATAAGATAGTTACTTTCTTTGGTTTACCTTCTCTTGGGGTAATGCTGCAACATTTGATGCTTCAACATTTCTGTCAACTTGGCTGCATTATAGAGAGCTTGATTTTGGAATAAGAAGTGATAGGCTTACCACCAATATGCAAAGGTTGTTGAAAAAGAAAAGACGATAGGCAAATTGCCAATATAAAGGAATATGCAGGAAGCTCAACAATAACTTCAGAAGCAGGAAAGCTGAGACAAGGAAATAGATGTCAGCCACGGAATATGGGAATTCATTACAGACAGGTTTCTTACCGCCTTTGTTAAGTATAAATTAGGGAATTGAATGGAGAACGATCCAGAAAGCTTCACATCGTTATGCCTGTCTGTCGTGTACCATCTTCTTTTTTCTTTTATCATTGCCATTGTTACATATAACCCTAGTCTTTGTTGAGTTTCTTTTATTTCTCTTTCTATTTATATATACATCATTTTCGTATCATTTTTCTATTACAATTCTAGTTGTTATATATACTATTTTTTGTATTTTTTATCTGTACAGTTAATTATTA

Network for GWHGAAEX005335

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module3

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.13	mTERF	254	548	4.40E-20

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003690	Molecular Function	double-stranded DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.790
SRP064423	SRR2545915	Juvenile tuber	1.160
SRP108465	SRR5643513	five period of Gastrodia elata	1.460
	SRR5643514	five period of Gastrodia elata	1.170
	SRR5643515	five period of Gastrodia elata	1.040
	SRR5643524	five period of Gastrodia elata	1.350
	SRR5643525	five period of Gastrodia elata	1.060
	SRR5643528	five period of Gastrodia elata	0.660
	SRR5643658	five period of Gastrodia elata	0.450
	SRR5643659	five period of Gastrodia elata	2.600
	SRR5643660	five period of Gastrodia elata	3.510
	SRR5643661	five period of Gastrodia elata	3.710
	SRR5643662	five period of Gastrodia elata	3.570
	SRR5643663	five period of Gastrodia elata	2.750
	SRR5643664	five period of Gastrodia elata	2.480
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.490
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.550
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.630
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.890
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.790
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.530
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.800
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.330
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.200
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.690
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.310
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.310
SRP279888	Gastro	Gastrodia elata tuber	3.21
	Juven	Juvenile tuber	1.32
	Mother_Gastro	Mother tuber of Gastrodia elata	0.79
	Mother_Juven	Mother tuber of Juvenile	0.48