Detail information of GWHGAAEX005341/evm.TU.scaffold_161.41


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08006.00E-18FOG: Predicted E3 ubiquitin ligase
nrgi|720000853|ref|XP_010256161.1|1.41E-29PREDICTED: E3 ubiquitin-protein ligase RING1-like [Nelumbo nucifera]
Swissprottr|Q8LPN7|RNG1L_ARATH5.00E-12E3 ubiquitin-protein ligase RING1-like
trEMBLtr|M0SLZ0|M0SLZ0_MUSAM1.00E-25Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P07730_001}
TAIRAT2G155806.00E-18RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000016611558431156883+
Transcript Sequence

Network for GWHGAAEX005341

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_21141551.20E-11
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.280
SRR2545915Juvenile tuber9.790
SRP108465SRR5643513five period of Gastrodia elata37.250
SRR5643514five period of Gastrodia elata41.540
SRR5643515five period of Gastrodia elata33.740
SRR5643524five period of Gastrodia elata32.160
SRR5643525five period of Gastrodia elata51.660
SRR5643528five period of Gastrodia elata39.440
SRR5643658five period of Gastrodia elata39.340
SRR5643659five period of Gastrodia elata46.580
SRR5643660five period of Gastrodia elata25.480
SRR5643661five period of Gastrodia elata42.300
SRR5643662five period of Gastrodia elata42.490
SRR5643663five period of Gastrodia elata34.950
SRR5643664five period of Gastrodia elata44.220
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_135.710
SRR6049655Rhizomagastrodiae_C368-T10_good_134.460
SRR6049656Rhizomagastrodiae_C368-T07_good_145.310
SRR6049657Rhizomagastrodiae_C368-T07_good_128.010
SRR6049658Rhizomagastrodiae_C368-T04_good_140.410
SRR6049659Rhizomagastrodiae_C368-T04_good_128.260
SRR6049660Rhizomagastrodiae_C368-T01_good_137.240
SRR6049661Rhizomagastrodiae_C368-T04_good_132.500
SRR6049662Rhizomagastrodiae_C368-T01_good_148.310
SRR6049663Rhizomagastrodiae_C368-T01_good_153.100
SRR6049664Rhizomagastrodiae_C368-T10_good_168.170
SRR6049665Rhizomagastrodiae_C368-T10_good_168.170
SRP279888GastroGastrodia elata tuber 71.48
JuvenJuvenile tuber127.14
Mother_GastroMother tuber of Gastrodia elata 117.70
Mother_JuvenMother tuber of Juvenile 120.15