Gene detail

Detail information of GWHGAAEX005347/evm.TU.scaffold_161.53

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695081530\|ref\|XP_009388290.1\|	5.47E-166	PREDICTED: terpene synthase 10-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q93X23\|MYRS_QUEIL	1.00E-162	Myrcene synthase, chloroplastic (Precursor)
trEMBL	tr\|M0UBV0\|M0UBV0_MUSAM	5.00E-164	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP23920_001}
TAIR	AT2G24210	4.00E-138	terpene synthase 10

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000166	1545109	1561664	-

Transcript Sequence
>GWHTAAEX005347 GAAGCGGCCAGCTGACAATATGCGGCAAGTTGAAGAGACACCGGTGGATCTGCAAGTTGAAGAGACACCGGTGGCTCGCAGATCGGGGAACTATCACCCATCTGTTTGGGATGACAGCTACATACAAAATTTGCCAACGGATTCCTTGGTGATTTACACATACGACGAGGCTTGCTTGAAACGATGGAATGTTTTGAAGGAGGAAATACGAATCAAGTTGGCCACTGGCATGCAAGATAATGTTGTGGATCAATTAGAAATGTTGGATGACTTACGTCAGCTCGGTGTATGCTATCATTTTCAAATAGAAATCCGGAATGTGCTAGCCAATTTAATGCTCTCAACAAAGAAAACAATGCAAGCAATTCATGATAATCTTCATGCCACTGCACTACTATTCAGGCTTCTACGGGAATATGGATTTAGTGACTCCTCACTAAGCGTGGATGAGTTGATAAGTTGTATAAAGAATAAGAATGGAAGCTTTACGGCAAACTATGATGAAGATATTAAGGGAATGTTGAGTCTTTATGAGGCTTCTTATCTTTTTAAGAAGGGAGAAGATGAGCTGGATGAAGTGGTGGAATTTGCAGTGAAGCGTTTAAGTGATATAAAGAAATCACATTTACATCTTAATCCAGGATTAGTGGAAGAAATTGATCACGCATTGGAACTGCCATTGCATTGGAGGTTTTCGAGATTGCACTCAAGATGGTTTATCAACGCTTATAAAGGAGAAGATAATATGAAGCCAATTTTGTTAGAGTTTTCTAAACTTGACTTCAACATGGTGCAGAGCATTTATAGGAAGGAACTCAAGGAGATGTCCAGGTGGTGGAAAGACTCTGGACTTGTTTGTGATCAACTTAGCTTTGCCAGAAATAGAATGGCAGAGCACTATTTTGGGAGCATTGGTTGTACTCCTTTGCCACATTTTGGAATGTGCAGGATTGGAATAGCTAAAACAATTTGCTTTATTACATTGATAGATGATATTTATGATGTGTATGGGACTTCGGATGAGTTGGTGCTTTTTACTAAGGCCGTGGAAGAGTGGAAAATAGATGAACAACTTCCAAGTTACATGAAGACATGCTTGGATGTATTTTTCAGCACTATCAATCAAATTGCCGGCTCTGCATATTCGGAAAAAGGATTAGATGTTCATCCATACCTTAAGCGAGCGTGGATAGATATATGCAAAGCATATTTAAAAGAGGCAAGATGGTATCATTCTGGAATGACTCCTTCATTACAAGACTACTTGGACAATGCCTGGCTTTCAGTAGCTGGCCCTCTCCTCCTCACTACAATTTATTGCTTGAGTCCGGACATAACATTGGAAACTCTCAATCACTACGAACAGTACCCAAGCTCTGTCCATCTCTCGTCGACTATTATTCGGCTCTATGATGATTTGGCAACAACGACGGATGAGATCAAGAGAGGGGATGTCGCAAAATGTATCCAATGTTATATGAAAGAGGATAATGGTTCAGAGTCAAAGGCACGCTACTATTTAAAGGATTTAATAAATAAAAAATGGAAAGAGTTGAATGGGGAAAATATGAACCCAAATTTAAAATTCATTCAGTCTTTCAAAGAGACGATCTTCAATGTCTTGAGAATATCGCAATCCTTTTATCAGTATGGGGATGGGCATGGAACATCAAACTCTGTAACAAAGAAGAGGATTTTCTCTGTTTTGATTAATCCGATTATATTTTGAAGAACACCCCCTCATTTGTTTCATTTCGCTTTACATGAGATCTTTATTATCACTAAGAAATTGTTTCTTATTTGGAAACAAGAACATATGCATTCTTGTCTCTTCTGTTATATCAGTAACAATTCCAATTGTATCAAACTCTTATCATTTTATTATATATAAAGGCTAATACAGT

Network for GWHGAAEX005347

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01397.20	Terpene_synth	29	217	8.20E-37
PF03936.15	Terpene_synth_C	248	511	1.40E-86

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0010333	Molecular Function	terpene synthase activity
GO:0016829	Molecular Function	lyase activity
GO:0000287	Molecular Function	magnesium ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	14.200
SRP064423	SRR2545915	Juvenile tuber	0.140
SRP108465	SRR5643513	five period of Gastrodia elata	42.550
	SRR5643514	five period of Gastrodia elata	0.960
	SRR5643515	five period of Gastrodia elata	11.650
	SRR5643524	five period of Gastrodia elata	0.800
	SRR5643525	five period of Gastrodia elata	0.040
	SRR5643528	five period of Gastrodia elata	0.000
	SRR5643658	five period of Gastrodia elata	0.000
	SRR5643659	five period of Gastrodia elata	0.000
	SRR5643660	five period of Gastrodia elata	0.070
	SRR5643661	five period of Gastrodia elata	0.000
	SRR5643662	five period of Gastrodia elata	0.000
	SRR5643663	five period of Gastrodia elata	0.000
	SRR5643664	five period of Gastrodia elata	0.000
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	47.950
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	126.500
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	100.350
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	28.310
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	32.210
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	31.400
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.610
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	22.260
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.900
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.320
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	167.970
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	167.970
SRP279888	Gastro	Gastrodia elata tuber	0.00
	Juven	Juvenile tuber	0.00
	Mother_Gastro	Mother tuber of Gastrodia elata	1.08
	Mother_Juven	Mother tuber of Juvenile	0.63