Detail information of GWHGAAEX005353/evm.TU.scaffold_161.60
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1472 | 2.00E-110 | Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins |
| nr | gi|743824745|ref|XP_010932858.1| | 0 | PREDICTED: histone acetyltransferase GCN5 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q338B9|GCN5_ORYSJ | 0 | Histone acetyltransferase GCN5 |
| trEMBL | tr|M0TMJ3|M0TMJ3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P04400_001} |
| TAIR | YGR252W | 2.00E-110 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000166 | 1784093 | 1834271 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005353
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00583.24 | Acetyltransf_1 | 277 | 352 | 9.70E-08 |
| PF00439.24 | Bromodomain | 476 | 556 | 6.00E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GNAT |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K06062 | PCAF, KAT2, GCN5 | Notch signaling pathway | map04330 |
| Thyroid hormone signaling pathway | map04919 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008080 | Molecular Function | N-acetyltransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 19.750 |
| SRR2545915 | Juvenile tuber | 14.440 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.580 |
| SRR5643514 | five period of Gastrodia elata | 15.520 | |
| SRR5643515 | five period of Gastrodia elata | 14.360 | |
| SRR5643524 | five period of Gastrodia elata | 14.010 | |
| SRR5643525 | five period of Gastrodia elata | 14.870 | |
| SRR5643528 | five period of Gastrodia elata | 17.020 | |
| SRR5643658 | five period of Gastrodia elata | 15.880 | |
| SRR5643659 | five period of Gastrodia elata | 17.020 | |
| SRR5643660 | five period of Gastrodia elata | 19.040 | |
| SRR5643661 | five period of Gastrodia elata | 17.610 | |
| SRR5643662 | five period of Gastrodia elata | 18.780 | |
| SRR5643663 | five period of Gastrodia elata | 16.820 | |
| SRR5643664 | five period of Gastrodia elata | 20.880 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.090 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.020 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 16.380 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.190 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 20.150 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 22.870 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.110 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.090 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.550 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 20.330 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.620 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.620 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 25.38 |
| Juven | Juvenile tuber | 21.08 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 21.20 | |
| Mother_Juven | Mother tuber of Juvenile | 22.61 |