Gene detail

Database	Orthologs	E value	Annotation
COG	gi\|42522915\|ref\|NP_968295.1\|	5.00E-15	RNA-binding protein [Bdellovibrio bacteriovorus HD100]
KOG	KOG0118	3.00E-65	FOG: RRM domain
nr	gi\|672194906\|ref\|XP_008776411.1\|	1.53E-85	PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Phoenix dactylifera]
Swissprot	tr\|P19684\|ROC5_NICSY	1.00E-29	33 kDa ribonucleoprotein, chloroplastic (Precursor)
trEMBL	tr\|B9RNK5\|B9RNK5_RICCO	2.00E-74	Ribonucleoprotein, chloroplast, putative {ECO:0000313\|EMBL:EEF47060.1}
TAIR	AT1G01080	3.00E-65	RNA-binding (RRM/RBD/RNP motifs) family protein

Scaffold	Start	End	Strand
GWHAAEX00000166	1903641	1935279	-

Transcript Sequence
>GWHTAAEX005357 GCTCTCATTTATCCCGTCTTTTGCGTTTGTCCCTGCTCCACTCCAAAAAGCTCTACTAGTCTCCACTTTCATGGCGGCGTTGGCCGCCACCCTCGCTCTCAACTTTTCCAACGTCCAGCCCGTCTCATCGCTCAACCTTATACATCCGTCATCCTTCTCGGTAATCCTTAAATGCCGCTCAAAGCATTCTGTCTCTTCTCTGCTTCTCCCTTTCAGATCCAAAAGAAATCCTATGGTTCTTGCCGTTGTTGAAAGCCAAAACATGGTCGACATGGTAAGCCTGGATTCTGTGGAGGAAGAGAAAACCTTTGCCGGGGAATTGAGCGCTGCTGCAGATGAGACGAAGCGCATGAGCCGGCCTTGTGAGCTCTACGTTTGCAACATTCCGAGGAACTACGATATCTCTCGTCTGCTCGAGTTATTTAAGCAGTATGGAACTGTGCTATCGGTTGAGGTTTCACGGGATCCTCTAACAAGTGTAAGTCGAGGTTGTGGCTATGTTACAATGGCTTCAATTTCTGAAGCAAAATTAGCATTATCTGCTTTGGATGGGAGTAATATTTCTGGACGAGAAATGAGGGTAAGCTTTTCAGCTGGCATGATTCCTGCCAGACAAAGTATGAAGGCCTTAAGTTCCGCTCTTACAAAGAACTTCATCTTTGAAAGCCCTTACAAGATTTATGTCGGTAATCTATCCATGTCCGCAAGGCCTCAAGAGTTGAAGGAATATTTTAGTCAATTTGGAACAATTGTGAGTACGAGGGTACTTCATGATCGCAAGTATGGGAAAAGTCGTGCCTATGCATTTATTTCTTTCTCTACTCCTGATGAAGTTAGCGTTGCAATCGAAGCAAATGGATCGGAGCTTTGTGGGCGCTTTATGACAATTGGGAAAGCTTTTGATTTTGAGCAATGACCAATGAAGAGATGTTTACGGATCTTTTTATTTTCTTTGTTCATTTCGGTGTTTCCCATCTAGACCTCAACGTCTAGTGATGCCTTTTGTGATACAGCTAGAGGAGGCTGAGGTAGTTTAAAGGCATTAAAAGGAATCATGACGCAGATTATAACTTTTACCTTCTTTAGAGATAAACATTTTTTTCATATGGTGTAATTTATGAAATATTATGGATAATGTTATTTTTTTAAAATTGAATGAATG

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Module ID	Function Annotation

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	100	170	1.50E-15
PF00076.21	RRM_1	203	271	3.90E-16

Protein Sequence

Gene family	subfamily
--	--

KO	Enzyme	pathway	mapID
--	--	--	--

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.000
SRP064423	SRR2545915	Juvenile tuber	0.000
SRP108465	SRR5643513	five period of Gastrodia elata	37.410
	SRR5643514	five period of Gastrodia elata	40.160
	SRR5643515	five period of Gastrodia elata	35.350
	SRR5643524	five period of Gastrodia elata	39.880
	SRR5643525	five period of Gastrodia elata	27.890
	SRR5643528	five period of Gastrodia elata	32.450
	SRR5643658	five period of Gastrodia elata	27.110
	SRR5643659	five period of Gastrodia elata	49.040
	SRR5643660	five period of Gastrodia elata	45.390
	SRR5643661	five period of Gastrodia elata	44.420
	SRR5643662	five period of Gastrodia elata	50.900
	SRR5643663	five period of Gastrodia elata	52.960
	SRR5643664	five period of Gastrodia elata	47.810
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	40.230
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	36.480
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	46.700
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	46.440
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	47.250
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	48.760
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	46.790
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	51.480
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	43.140
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	41.500
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	48.490
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	48.490
SRP279888	Gastro	Gastrodia elata tuber	84.19
	Juven	Juvenile tuber	77.12
	Mother_Gastro	Mother tuber of Gastrodia elata	51.99
	Mother_Juven	Mother tuber of Juvenile	57.57