Gene detail

Detail information of GWHGAAEX005360/evm.TU.scaffold_161.69

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4197	0	FOG: PPR repeat
nr	gi\|672133248\|ref\|XP_008790235.1\|	0	PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290 [Phoenix dactylifera]
Swissprot	tr\|Q9LN69\|PPR50_ARATH	0	Putative pentatricopeptide repeat-containing protein At1g19290
trEMBL	tr\|A5AJV8\|A5AJV8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN66818.1}
trEMBL	tr\|A5AJV8\|A5AJV8_VITVI	4.00E-108	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN66818.1}
trEMBL	tr\|A5AJV8\|A5AJV8_VITVI	7.00E-56	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN66818.1}
trEMBL	tr\|A5AJV8\|A5AJV8_VITVI	1.00E-51	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN66818.1}
trEMBL	tr\|A5AJV8\|A5AJV8_VITVI	1.00E-48	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN66818.1}
trEMBL	tr\|A5AJV8\|A5AJV8_VITVI	1.00E-40	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN66818.1}
TAIR	AT1G19290	0	Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000166	2027993	2030323	+

Transcript Sequence
>GWHTAAEX005360 ATGGAAAGGCGTGGATGGAAACCTAGCGCGAGGTCGTGCAATACTATGCTCAGCGGTCTAGTCAAAGCCGGTGAATTTCAGACAGTAATTCTGACATATGAACAGATGATTCGAGCTGGGATACTGCCAGATGCTTTCACTGTTTCTATAATGCTCAATGCTTACTGCAAAGATGGAAAGACACAAAAAGCTGCAGAATTCATGGCTTCTATGAAAAACAGGGGATTTGAAGTGAACCTAGTGGCTCATCATTCTCTCATTGATGGTTACTGCAGCCTTGGGCAGACAGAAGAGGCATTTGGTGTTCTGAGGTCAATGGAAAGCGATGGAATTTCACCAAACGTTAAGACATATACTTTATTGATCAAGGGGTATTGCAAAGAGGGAAAGCTAGAAGAGGCAGAGAAAGTCTTTAAGCACATGAATGATGCTTTGGGCTTAAAAGCCGATGAGGTACTTTATGGTATTCTCATAGATGCTTATTGTAGACTAGGAAATATTGAAGATGCGATTAGGATGAAGGATGAAATGTTGACTTACGGACTAAAGACAAACACATTTATCTACAATGCAATGATTCATGGTTATTGCAAGACTGGAAAGGTAAGAGAAGCTGAGTTATTAATAGTTGATATGGAATTTGCTCATCTTAAACCAGATCAATACAGTTATAATACTCTTTTGGATGGGTATTGCACATGCGGTCAGATGGATAAAGCATTTGAAATTTGTGACTTGATGGTTCGCAATAATGTAGGAGTGACCATTCTCACTTACAATACCCTTCTCAAAGGTTTTTGTCGGATTGATGCCTTGCATGATGCGCTGCACTTGTGGTTTTTGATGTTGAAAAGAGGAATGATCCCTAATGAGGTTAGCTTCAGCATTCTATTAGATGCATTTTTTAAAACAAGGGATTTTGAAAAAGCTTTTAAACTTTGGAATGACATGTTGTCCAAGGGATATGCAAAGAGCCAAATCACTTTCAATACTGTGATTAATGGGCTGTGCAAACTTGGTAGAATGGAAGATGCAGAGGAGGTTGTCCAAAAGATGAAAGATTGGGGATGCTTACCTGATAGTGTTACATATAGAACTCTTATTGATGGTTTCTGTAAGATGGGTGATATCGAAAAAGCTTTTAAAATTAAGGGCATGATGCAGATGTTGGGATTTCTTCCCTCAATTGAAATGTATAACTCTCTTATCACTGGGCTTTTCAAATCAAATAGGCATGGTGAAGTTAAGGATCTCATAGCTGAAATGTGCGAGAAAAAATTGGCACCCAACGTTGTGACTTATGGAGCTCTAATATCAGGTTGGTGCGGTGAAGGAATGATGCAGAAAGCTTTTGATTGTTTTTTTGAAATGACTAGGAAGGGCTTGACACCAAATTTGTGGATTTGTAGCACATTTGTAAGTAGCTTGTACCGGCAAGATAAAATTGATGAGGCCAATGTCTTGCTACAAAATCTTGTTGATTTCAACTTTAAAAAATATGAATTTTTCCAGAGGACTCATGATCTCAATTTGAACCACCTTTATGCGAACAAAAATGAAGATTTCTTCCATGAAGGTTCAATTAAAAAACTTGAACCCAACTATATCATGTGCAATGTTGCTATTGCTGGTATGTGCAGATCTGACAGAATAGAAGATGCAAATCGTTTTCTCTCTTTTTTGTCTAATAAAGGCTTTTACCCGGACAAATTTACTTACTCCAGCTTAATTCATGCATATTCATCACGTGGCGATGTAAATTATGCTTTCTTGCTTCGCGATGAGATGGTGAAGAGAGGTATTCTTCCTTGCATTGTGACTTACAATGCACTCATCAATGGCTTGTGCAAGTCTGGAAATTTGGAGAGAGCTGTCAGGCTTTTTGATAAGCTTGCTGAAAAGGGGTTAGCTCCCAATGCTATTACATTCAACACATTGATTGATGGGTGTTGCAGGTCTGGTGACCTTACCGAAGCCTTTAAATTCAAACAAAAAATGGTCGAACATGGAATTTGTCCAAATGTAATTACATATTCAATTTTGATACATGGTCTTTGCAGACAAGGTGATATGGAAACATCCAGCAAGCTTTTGAATCAAATGATTGAGAGTGGTATAGATCCAAACTTTGTGACATATTGCACGTTAGTTCAGGGTTATATAAGATCTGGGGACATTAGGCAGGTTTCAAAGCTTTATGAAGAGATGCATATCCGTGGACTTTTTCCAACTGCTAATTGCACAGGAATTCTGAATCCTGCAGAACCTAAACAGTTCAAAAAAGTTAATCAAAGTGCTTTTAAAGTTTCTGAATGTGATGCATTATGCTAA

Network for GWHGAAEX005360

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13041.5	PPR_2	9	57	1.60E-11
PF13041.5	PPR_2	79	127	1.30E-13
PF12854.6	PPR_1	146	177	3.40E-09
PF13041.5	PPR_2	185	233	1.80E-15
PF13041.5	PPR_2	256	303	2.80E-11
PF13041.5	PPR_2	325	373	3.70E-18
PF01535.19	PPR	398	426	0.001
PF13041.5	PPR_2	429	467	1.10E-10
PF13041.5	PPR_2	533	581	2.60E-08
PF13041.5	PPR_2	603	652	2.40E-19
PF12854.6	PPR_1	670	701	1.10E-12
PF01535.19	PPR	711	740	0.00012

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.990
SRP064423	SRR2545915	Juvenile tuber	10.390
SRP108465	SRR5643513	five period of Gastrodia elata	7.670
	SRR5643514	five period of Gastrodia elata	8.790
	SRR5643515	five period of Gastrodia elata	8.730
	SRR5643524	five period of Gastrodia elata	9.140
	SRR5643525	five period of Gastrodia elata	8.600
	SRR5643528	five period of Gastrodia elata	5.190
	SRR5643658	five period of Gastrodia elata	7.610
	SRR5643659	five period of Gastrodia elata	12.790
	SRR5643660	five period of Gastrodia elata	14.430
	SRR5643661	five period of Gastrodia elata	8.440
	SRR5643662	five period of Gastrodia elata	9.410
	SRR5643663	five period of Gastrodia elata	12.000
	SRR5643664	five period of Gastrodia elata	8.290
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.880
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.200
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.310
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.080
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	11.160
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	10.450
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.300
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.860
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.860
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.860
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.330
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.330
SRP279888	Gastro	Gastrodia elata tuber	14.19
	Juven	Juvenile tuber	10.23
	Mother_Gastro	Mother tuber of Gastrodia elata	8.50
	Mother_Juven	Mother tuber of Juvenile	7.52