Detail information of GWHGAAEX005364/evm.TU.scaffold_161.73
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3169 | 6.00E-73 | RNA polymerase II transcriptional regulation mediator |
| nr | gi|743849951|ref|XP_010939752.1| | 2.29E-131 | PREDICTED: mediator of RNA polymerase II transcription subunit 6 [Elaeis guineensis] |
| Swissprot | tr|F4IXJ7|MED6_ARATH | 1.00E-98 | Mediator of RNA polymerase II transcription subunit 6 |
| trEMBL | tr|M0T0X5|M0T0X5_MUSAM | 2.00E-131 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P23000_001} |
| TAIR | AT3G21350 | 6.00E-73 | RNA polymerase transcriptional regulation mediator-related |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000166 | 2147475 | 2158634 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX005364
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04934.13 | Med6 | 35 | 159 | 3.90E-40 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MED6 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter |
| GO:0003712 | Molecular Function | transcription cofactor activity |
| GO:0016592 | Cellular Component | mediator complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 26.450 |
| SRR2545915 | Juvenile tuber | 21.300 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 19.030 |
| SRR5643514 | five period of Gastrodia elata | 19.880 | |
| SRR5643515 | five period of Gastrodia elata | 16.300 | |
| SRR5643524 | five period of Gastrodia elata | 16.770 | |
| SRR5643525 | five period of Gastrodia elata | 13.630 | |
| SRR5643528 | five period of Gastrodia elata | 12.340 | |
| SRR5643658 | five period of Gastrodia elata | 16.510 | |
| SRR5643659 | five period of Gastrodia elata | 24.010 | |
| SRR5643660 | five period of Gastrodia elata | 23.860 | |
| SRR5643661 | five period of Gastrodia elata | 25.730 | |
| SRR5643662 | five period of Gastrodia elata | 23.760 | |
| SRR5643663 | five period of Gastrodia elata | 24.360 | |
| SRR5643664 | five period of Gastrodia elata | 24.130 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 20.960 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 34.440 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 23.900 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 21.110 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 18.010 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.160 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 25.230 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.770 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.790 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 21.240 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.460 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.460 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 24.11 |
| Juven | Juvenile tuber | 30.78 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.49 | |
| Mother_Juven | Mother tuber of Juvenile | 15.23 |